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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57092.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  59/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5
:229 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   20->136 1yg2A PDBj 2e-10 34.3 %
:RPS:PDB   12->90 2co5B PDBj 4e-06 10.0 %
:RPS:SCOP  13->90 2co5A1  a.4.5.48 * 7e-08 11.3 %
:HMM:SCOP  15->190 1yg2A_ a.4.5.61 * 5.6e-31 25.4 %
:RPS:PFM   47->92 PF03551 * PadR 5e-04 37.0 %
:HMM:PFM   18->96 PF03551 * PadR 5.6e-15 35.1 77/86  
:HMM:PFM   113->152 PF07729 * FCD 1.2e-05 46.2 39/125  
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57092.1 GT:GENE BAD57092.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2423206..2423895 GB:FROM 2423206 GB:TO 2423895 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD57092.1 LENGTH 229 SQ:AASEQ MPTSEPEPALVNLPPTSWAVLAMLSYEEEISGYDLKKWADWSLRYFYWSPSHSQIYSELKKLEQHGLATSRVDADNAMRGRRLYRITDAGREAVTAWHNTTPVDQPVLKNHVMLRIMFGHLSSPERLKEILREHIDYVDAIEKRAAVDAEAAKMEAGWAYSQIVLEWAERYWATQRELALDLIDRIDAADAVLRGAEHDERRRYASPTPGRWREVEQRVKEQDERPERG GT:EXON 1|1-229:0| SEG 140->156|aiekraavdaeaakmea| SEG 178->194|laldlidridaadavlr| BL:PDB:NREP 1 BL:PDB:REP 20->136|1yg2A|2e-10|34.3|105/169| RP:PDB:NREP 1 RP:PDB:REP 12->90|2co5B|4e-06|10.0|70/94| RP:PFM:NREP 1 RP:PFM:REP 47->92|PF03551|5e-04|37.0|46/84|PadR| HM:PFM:NREP 2 HM:PFM:REP 18->96|PF03551|5.6e-15|35.1|77/86|PadR| HM:PFM:REP 113->152|PF07729|1.2e-05|46.2|39/125|FCD| RP:SCP:NREP 1 RP:SCP:REP 13->90|2co5A1|7e-08|11.3|71/89|a.4.5.48| HM:SCP:REP 15->190|1yg2A_|5.6e-31|25.4|173/0|a.4.5.61|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 69 OP:NHOMOORG 59 OP:PATTERN -------------------------------------------------------------------- ----1--1------133----1--11-----111112221---1-------------1---1----1--1----------------------------------------------------------------------------1-------------------2-11-----------------------1-----111--1---1-111211-------1-------1--------------------------------11--------------------------------------------------------------------------------------------1-----------------------------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------21111111111------------------11----------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 135 STR:RPRED 59.0 SQ:SECSTR ###HHHHHHHHcHHHHHHHHHHHHTTTEEEGGGHHHHHHTcHHHHHcccccHHHHHHHHHHHHHTTcEEEEccccEccTTccEEEEcHHHHHHHHHHHH#ccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHH########################################################################################## DISOP:02AL 1-5, 8-10, 74-77, 216-229| PSIPRED ccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHcccEEcccccHHHHHHHHHHHcccEEEEEEEccccccccEEEEcHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccc //