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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57093.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  379/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5d.110.2
:283 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   27->203 1mkmB PDBj 5e-19 30.5 %
:RPS:PDB   20->110 1biaA PDBj 3e-07 11.0 %
:RPS:PDB   84->248 3d3oA PDBj 9e-20 11.3 %
:RPS:SCOP  14->82 1mkmA1  a.4.5.33 * 2e-09 24.6 %
:RPS:SCOP  85->244 1td5A  d.110.2.2 * 2e-22 26.2 %
:HMM:SCOP  11->82 1mkmA1 a.4.5.33 * 6.6e-13 34.7 %
:HMM:SCOP  66->249 1tf1A_ d.110.2.2 * 2.5e-38 41.2 %
:RPS:PFM   13->62 PF09339 * HTH_IclR 3e-05 42.0 %
:RPS:PFM   128->200 PF01614 * IclR 3e-06 43.8 %
:HMM:PFM   127->244 PF01614 * IclR 7.9e-29 41.5 118/129  
:HMM:PFM   14->63 PF09339 * HTH_IclR 1e-16 44.0 50/52  
:BLT:SWISS 11->203 KDGR_ERWCH 9e-22 31.8 %
:BLT:SWISS 224->281 SYFB_XANOR 4e-04 34.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57093.1 GT:GENE BAD57093.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2423902..2424753) GB:FROM 2423902 GB:TO 2424753 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57093.1 LENGTH 283 SQ:AASEQ MNHQADTTAPSAVLDRVSLVLDAFDGPGRLTLAQIVRRTGLPRSSAHRMLDRLVQLRWLRREGRDYVLGIRLVELGSLAVHQDRLHRAAMPYLHELHRATGFLVHLAVLDGPDVVYLEKIGGRLSAAVPTRIGGRRPAHCTGVGKALLAYSGEDRLAALGTDQLSRSTKYSIASTARLRSELDKIRSFGIAHEREESLPGFGCVAAPIGEVGEAVAAVSVCGPVDRLAFDHRLTAPVRTTALAIWRNLDDGMSRVHPTLQQARPLPGGVARAAMPSARPLEYA GT:EXON 1|1-283:0| BL:SWS:NREP 2 BL:SWS:REP 11->203|KDGR_ERWCH|9e-22|31.8|192/305| BL:SWS:REP 224->281|SYFB_XANOR|4e-04|34.5|58/792| SEG 204->220|vaapigevgeavaavsv| BL:PDB:NREP 1 BL:PDB:REP 27->203|1mkmB|5e-19|30.5|177/247| RP:PDB:NREP 2 RP:PDB:REP 20->110|1biaA|3e-07|11.0|91/292| RP:PDB:REP 84->248|3d3oA|9e-20|11.3|159/167| RP:PFM:NREP 2 RP:PFM:REP 13->62|PF09339|3e-05|42.0|50/52|HTH_IclR| RP:PFM:REP 128->200|PF01614|3e-06|43.8|73/127|IclR| HM:PFM:NREP 2 HM:PFM:REP 127->244|PF01614|7.9e-29|41.5|118/129|IclR| HM:PFM:REP 14->63|PF09339|1e-16|44.0|50/52|HTH_IclR| GO:PFM:NREP 2 GO:PFM GO:0003677|"GO:DNA binding"|PF09339|IPR005471| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF09339|IPR005471| RP:SCP:NREP 2 RP:SCP:REP 14->82|1mkmA1|2e-09|24.6|69/75|a.4.5.33| RP:SCP:REP 85->244|1td5A|2e-22|26.2|160/179|d.110.2.2| HM:SCP:REP 11->82|1mkmA1|6.6e-13|34.7|72/0|a.4.5.33|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 66->249|1tf1A_|2.5e-38|41.2|177/0|d.110.2.2|1/1|GAF domain-like| OP:NHOMO 1264 OP:NHOMOORG 384 OP:PATTERN ------------------------6--32-53------------------------------------ --413--2335---22211-16---B11111-63359BQQ22-43521-11199E3-1----5168K48521---233----3----------1------------------------------------------22211----3-------------------------------------3421311-31-11111121121111143331112113312--------1---------------------1---11----------------------------------------------------------------12--2-----------1--1-------------11--1-1215-1-2---------------2-422--622-3122222222213-121--31-83--433123422265811--356-1-1212--------211-------------------------------------3--2DB88666A7647775889A77772693EADD511663323227351A51111---------------111-1----11-1-----131143311-----------1---------------------11--2-1-2-1-------------------------1-1------42332316445655534-4453545343463555556767241216265646666656555632333331-211221122222----------------241111-1-----111-1121112---4-21111223122311222-------------2------1112----------------------------------------------------------------112111--- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 248 STR:RPRED 87.6 SQ:SECSTR HHHHTHHHHHHHHTcHHHHHHHHHHTTccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEEEEETTEEEEEEEEccccTTTccHHHHHHHHHHHHHHHHccEEEEEEEETTEEEEEEEEcccccccccccTTccccGGcHHHHHTTcHHHHHHHHHHHHHHHHHHHHGGGTccccHHHHHHHHHHHHcEEEEEccccTTEEEEEEEEEEETTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHTTcc################################### DISOP:02AL 1-12, 254-283| PSIPRED ccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccEEEHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccEEEEEEEccEEEEEEEEcccccEEEEEcccccccccccHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccEEEccccccccEEEEEEEEccccEEEEEEEEEEHHHccHHHHHHHHHHHHHHHHHHHHccccccccccHHHcccccccccccccccccccccc //