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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57094.1
DDBJ      :             putative hydroxylase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  137/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.29.3e.6.1
:392 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->384 2or0B PDBj e-132 63.0 %
:RPS:PDB   11->360 1egcA PDBj 6e-35 16.7 %
:RPS:SCOP  11->200 1bucA2  e.6.1.1 * 4e-15 18.3 %
:RPS:SCOP  238->360 2c0uA1  a.29.3.1 * 2e-17 13.4 %
:HMM:SCOP  1->207 2c12A2 e.6.1.1 * 1.6e-29 23.8 %
:HMM:SCOP  226->365 1bucA1 a.29.3.1 * 4.6e-15 29.0 %
:RPS:PFM   238->368 PF08028 * Acyl-CoA_dh_2 2e-13 36.6 %
:HMM:PFM   236->368 PF08028 * Acyl-CoA_dh_2 2.5e-46 44.4 133/134  
:HMM:PFM   117->149 PF02770 * Acyl-CoA_dh_M 9.1e-05 30.3 33/52  
:HMM:PFM   10->80 PF02771 * Acyl-CoA_dh_N 0.00061 22.5 71/113  
:BLT:SWISS 3->392 PIGM_RHOER e-168 69.2 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57094.1 GT:GENE BAD57094.1 GT:PRODUCT putative hydroxylase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2424937..2426115) GB:FROM 2424937 GB:TO 2426115 GB:DIRECTION - GB:PRODUCT putative hydroxylase GB:PROTEIN_ID BAD57094.1 LENGTH 392 SQ:AASEQ MTKVLDNIAAIADRLREQSPEAERLGRLPDDTAKLLKSAGPIRLLQPKKYGGFEAHPREFAETVMAAAALDPATGWICGIVGVHPWQLAFADPKVQEEVWGADNDTWMASPYAPTGIARPVEGGYIFNGRWQFSSGTDHCDWIFLGAMLGDPEGNIATPPTMLHMILPRSDYEIVEDSWNVVGLKGTGSKDIIVKDAFVPSYRVMNGDHVIDGTAQRQYGVTETLYKMPWSNMFPLGITSAVIGIAEGALAAHLDYQRDRVGAQGTAIKDDPYVLFAVGEAAADINAARQELLANVDRMWDLVDAGKEVSFADRAAGRRTQVRAAWRAVMAVDQIFARSGGNALRMDKPLQRFWRDAHAGLNHAIHVPSTVYHASALSSLGIEPPQHLRSMI GT:EXON 1|1-392:0| BL:SWS:NREP 1 BL:SWS:REP 3->392|PIGM_RHOER|e-168|69.2|390/393| BL:PDB:NREP 1 BL:PDB:REP 3->384|2or0B|e-132|63.0|373/397| RP:PDB:NREP 1 RP:PDB:REP 11->360|1egcA|6e-35|16.7|329/387| RP:PFM:NREP 1 RP:PFM:REP 238->368|PF08028|2e-13|36.6|131/135|Acyl-CoA_dh_2| HM:PFM:NREP 3 HM:PFM:REP 236->368|PF08028|2.5e-46|44.4|133/134|Acyl-CoA_dh_2| HM:PFM:REP 117->149|PF02770|9.1e-05|30.3|33/52|Acyl-CoA_dh_M| HM:PFM:REP 10->80|PF02771|0.00061|22.5|71/113|Acyl-CoA_dh_N| RP:SCP:NREP 2 RP:SCP:REP 11->200|1bucA2|4e-15|18.3|186/232|e.6.1.1| RP:SCP:REP 238->360|2c0uA1|2e-17|13.4|119/170|a.29.3.1| HM:SCP:REP 1->207|2c12A2|1.6e-29|23.8|206/0|e.6.1.1|1/1|Acyl-CoA dehydrogenase NM domain-like| HM:SCP:REP 226->365|1bucA1|4.6e-15|29.0|131/151|a.29.3.1|1/1|Acyl-CoA dehydrogenase C-terminal domain-like| OP:NHOMO 287 OP:NHOMOORG 139 OP:PATTERN -------------------------------------------------------------------- ----2-----1---34422-24--442222234777559A-13-------1--11--1--243-6-22231--------------------------------------------------------------------------11--1---------------------------------1-------1-1--------1----------1-------1----------1---111----------11----------------------------------------------------------------------------------------------------2---------------------------1-----2-5-211----2-----------1--------11-1-41171--322---1-1----2-11---11111111---------------------------------------58--1----1-13122----222-1----1312324----11-------1-1--1-------------------1----------------------------14--------------------------------------1--------1------1-----------------------------------------------------1---------------------------------------------------------------2---------------11111-----2-----2-11-121---11---------1-------------1------------------------------------------------------------------------- ---------------------------------------------------1-1------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 387 STR:RPRED 98.7 SQ:SECSTR ##cHHHHHHHHHHHTTTTHHHHHHHccccHHHHHHHHHHTcccTTccTTTTcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHTTccHHHHHHHEcccTTccccGGGcccEEEEcccEEEEEEEEEEEETGGGccEEEEEEEccccTTccHHHHEEEEEEETTcTTEEEcccccccccTTccEEEEEEEEEEEEGGGccccTTcHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTcEccccccGGGcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGcTTcHHHHHHHHHGGGHHGGTTTccHHHHHHHHHHHHHHHHHHHH### DISOP:02AL 388-392| PSIPRED cHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccHHHccccccHHHHHHHHHHHHHHcHHHHHHHHHHcHHHHHHHHcHHHHHHHHHccccccccccccccccEEEEEccEEEEEEEEEEEcccccccEEEEEEEEccccccccccccEEEEEEcccccEEEccccccccccccccEEEEEEEEEEcHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHccccc //