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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57098.1
DDBJ      :             putative epimerase
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  446/915 : Eukaryota  68/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:305 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   12->41 1udcA PDBj 2e-04 43.3 %
:RPS:PDB   13->301 2b69A PDBj 5e-14 20.1 %
:RPS:SCOP  1->38 2c54A1  c.2.1.2 * 9e-05 26.3 %
:RPS:SCOP  12->303 1kbzA  c.2.1.2 * 2e-18 13.0 %
:HMM:SCOP  10->306 1e6uA_ c.2.1.2 * 8.9e-34 26.0 %
:RPS:PFM   14->210 PF01370 * Epimerase 3e-06 29.7 %
:RPS:PFM   256->299 PF08338 * DUF1731 2e-04 40.9 %
:HMM:PFM   14->227 PF01370 * Epimerase 1.3e-15 23.7 211/238  
:HMM:PFM   256->302 PF08338 * DUF1731 1.6e-14 40.4 47/48  
:BLT:SWISS 9->305 Y2239_MYCBO 1e-69 45.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57098.1 GT:GENE BAD57098.1 GT:PRODUCT putative epimerase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2428327..2429244 GB:FROM 2428327 GB:TO 2429244 GB:DIRECTION + GB:PRODUCT putative epimerase GB:PROTEIN_ID BAD57098.1 LENGTH 305 SQ:AASEQ MPEMSWCTIAGMRIVMVGSSGFLGNHLTTRLRADGHDVVRLVRREPAAPGEVRWEPDTGRLDPAVLSGADVAVNLCGAAIAGARWTPEYRALLRDSRIGTTRIFAGAVAAAGVPVLLNASAAGYYGDTGERDVVESDPPAGDFLGTMCREWEAATEPARAAGTRVVLLRTSNVLAADSDVIAKLSPIFKLGLGGRFGSGRQYMPWISLPDWLAAVTTLMTADVSGPVNLVAPEAVTNARFAKAFGAALGRPAVLVLPGAVLKLIGGEAGAELLHGHKMRPKVLESIGFDFQHETLAAALGWALGR GT:EXON 1|1-305:0| BL:SWS:NREP 1 BL:SWS:REP 9->305|Y2239_MYCBO|1e-69|45.1|297/301| SEG 105->113|agavaaagv| BL:PDB:NREP 1 BL:PDB:REP 12->41|1udcA|2e-04|43.3|30/338| RP:PDB:NREP 1 RP:PDB:REP 13->301|2b69A|5e-14|20.1|279/302| RP:PFM:NREP 2 RP:PFM:REP 14->210|PF01370|3e-06|29.7|195/232|Epimerase| RP:PFM:REP 256->299|PF08338|2e-04|40.9|44/48|DUF1731| HM:PFM:NREP 2 HM:PFM:REP 14->227|PF01370|1.3e-15|23.7|211/238|Epimerase| HM:PFM:REP 256->302|PF08338|1.6e-14|40.4|47/48|DUF1731| GO:PFM:NREP 3 GO:PFM GO:0003824|"GO:catalytic activity"|PF01370|IPR001509| GO:PFM GO:0044237|"GO:cellular metabolic process"|PF01370|IPR001509| GO:PFM GO:0050662|"GO:coenzyme binding"|PF01370|IPR001509| RP:SCP:NREP 2 RP:SCP:REP 1->38|2c54A1|9e-05|26.3|38/362|c.2.1.2| RP:SCP:REP 12->303|1kbzA|2e-18|13.0|284/298|c.2.1.2| HM:SCP:REP 10->306|1e6uA_|8.9e-34|26.0|277/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 602 OP:NHOMOORG 516 OP:PATTERN --------------------------------------------------------------11---- 12213111111-1112211-1211221111112222432211-121111221222111--1111112111------------1-----111--111---1-211121111--------------11111111111111111-----11111111111111111111-11111111111111111-------11111111111-111111111111111-1111111111111111111111111111111111-----------------------------------------------------------------------------------------------------1111-1-------------1-1-----------111--------------------------------------------------------------------------------------------------------------1-----1111----------------1-----1----------------1---------------------122221111111111---------111121111-------------------11-----11111-111111111111111111111111-----1-------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111--11-----11112-1111111111111111111-11111-11111111122111111111111111111111111-111111111--111111111111----111122-----------------------------------------------11 ----11--------------------------------------------------------------------------------------------------------2211-1--11111123-213E1-31411--21111-111-11-11-1111-112111111---1-1112H111111122-111------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 301 STR:RPRED 98.7 SQ:SECSTR cccccccTHTTcEEEEETTTcHHHHHHHHHHTTcEEEEEEccccccGGGTGGGTTcTTEEEEEccTTccccccccEEEEccccccHHHHTcHHHHHHHHHHHHHHHHHHHHHTcEEEEEEEGGGGcccccccccccccccTTHHHHHHHHHHHHHHHHHHHcccEEEEEEccEEcTTcTcccHHHHHHHHHHHTcEcccccEEEcEEHHHHHHHHHHHTcccHcccEEEccccEEEHHHHHHHHHHHHTccccEEEETcccEEEEEcccTTcccccccccHHHHHHccccccHHHHHHHHH#### DISOP:02AL 1-4, 6-7| PSIPRED cccccHHHHcccEEEEEccccHHHHHHHHHHHHcccEEEEEEcccccccccEEEEEcccHHHHHHHccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEccEEEcccccHHHHHHHHHHHHcccccccccEEEccEEHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHcccccccccHHHHHHHHcccHHHHHcccccHHHHHHHcccccccccHHHHHHHHHcc //