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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57102.1
DDBJ      :             putative oxidoreductase
Swiss-Prot:             

Homologs  Archaea  11/68 : Bacteria  187/915 : Eukaryota  13/199 : Viruses  0/175   --->[See Alignment]
c.1.4c.3.1c.4.1
:646 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   136->182,304->463 1ps9A PDBj 1e-14 36.6 %
:RPS:PDB   136->463 3ej8A PDBj 2e-20 9.8 %
:RPS:SCOP  3->336 1z41A1  c.1.4.1 * 2e-23 17.9 %
:RPS:SCOP  328->460 1ps9A3  c.4.1.1 * 9e-14 40.8 %
:HMM:SCOP  2->356 1oybA_ c.1.4.1 * 3e-69 36.6 %
:HMM:SCOP  325->523 1ps9A3 c.4.1.1 * 3e-21 35.0 %
:HMM:SCOP  484->616 1djnA2 c.3.1.1 * 2.1e-07 29.5 %
:RPS:PFM   5->182 PF00724 * Oxidored_FMN 4e-11 32.4 %
:RPS:PFM   377->451 PF00070 * Pyr_redox 3e-07 50.0 %
:HMM:PFM   5->323 PF00724 * Oxidored_FMN 8.1e-39 29.0 317/341  
:HMM:PFM   377->453 PF00070 * Pyr_redox 1e-07 32.4 68/81  
:BLT:SWISS 5->463 STCD_RHIME 3e-18 27.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57102.1 GT:GENE BAD57102.1 GT:PRODUCT putative oxidoreductase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2432522..2434462) GB:FROM 2432522 GB:TO 2434462 GB:DIRECTION - GB:PRODUCT putative oxidoreductase GB:PROTEIN_ID BAD57102.1 LENGTH 646 SQ:AASEQ MVPDLSSPLPLGALRLRNRLVATAHGSGAVAAGLAQPGDDDYWRRCAAGGAAMVVAGGTVVSPESGNRTGNITEAWRPEAVPGLRRRAAAIAGEGAIACCQLVHLGRETLGAELWEHPVAPSPVRSPREPVRARTLTEPEIDRLVDDFTVSARHAADAGFAAVELHAAHGYLLAQFLSPATNHRAGAETAAGRARVLHRLHAALSTACPGLALGVRVSLEGAGEAGLDLAGLAELLPLLDRFDYVNVTVGVRTTYVRDMATTAPPLLSALPVLRAATTRPLLVSQAFRDRADLTAALAAGADLVGMARPFIADPAIATKLLRGEDRHIRPCVSCNEDCRSFTPVLLCSVNPELAPPGEPARPARPLALGLPTFPTHRIAVVGAGPAGLEAAHRLGPLGEVTLFEADSEIGGQLRSAARAPHRGGWGRLLEYYRHNLDGVRLRLGHRVTAAELTAFDDVVLAVGASETTARDADCATGLITAPERVRPGDHVVVVDDGFGWWLGVGAVEAALAAGAGRVTLLVPGPAAVAGIPPESRVQLRARWTGRPVRILVETACAEFGTEAGRTVVVTRNLLSGEEIRLTCDRLVRVGERRSHDWTELAAAAPGRGVQVIGDALVPRRVAHAVAEGRAAAAAIAARISSAPVLN GT:EXON 1|1-646:0| BL:SWS:NREP 1 BL:SWS:REP 5->463|STCD_RHIME|3e-18|27.1|442/678| SEG 47->61|aaggaamvvaggtvv| SEG 85->98|rrraaaiagegaia| SEG 118->134|pvapspvrsprepvrar| SEG 184->195|ragaetaagrar| SEG 219->239|legageagldlaglaellpll| SEG 286->303|afrdradltaalaagadl| SEG 351->371|pelappgeparparplalglp| SEG 488->533|gdhvvvvddgfgwwlgvgaveaalaagagrvtllvpgpaavagipp| SEG 619->642|rrvahavaegraaaaaiaarissa| BL:PDB:NREP 1 BL:PDB:REP 136->182,304->463|1ps9A|1e-14|36.6|200/671| RP:PDB:NREP 1 RP:PDB:REP 136->463|3ej8A|2e-20|9.8|317/421| RP:PFM:NREP 2 RP:PFM:REP 5->182|PF00724|4e-11|32.4|173/340|Oxidored_FMN| RP:PFM:REP 377->451|PF00070|3e-07|50.0|64/78|Pyr_redox| HM:PFM:NREP 2 HM:PFM:REP 5->323|PF00724|8.1e-39|29.0|317/341|Oxidored_FMN| HM:PFM:REP 377->453|PF00070|1e-07|32.4|68/81|Pyr_redox| GO:PFM:NREP 5 GO:PFM GO:0010181|"GO:FMN binding"|PF00724|IPR001155| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00724|IPR001155| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00070|IPR001327| GO:PFM GO:0050660|"GO:FAD binding"|PF00070|IPR001327| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00070|IPR001327| RP:SCP:NREP 2 RP:SCP:REP 3->336|1z41A1|2e-23|17.9|329/337|c.1.4.1| RP:SCP:REP 328->460|1ps9A3|9e-14|40.8|125/179|c.4.1.1| HM:SCP:REP 2->356|1oybA_|3e-69|36.6|352/0|c.1.4.1|1/1|FMN-linked oxidoreductases| HM:SCP:REP 325->523|1ps9A3|3e-21|35.0|177/0|c.4.1.1|1/1|Nucleotide-binding domain| HM:SCP:REP 484->616|1djnA2|2.1e-07|29.5|122/0|c.3.1.1|2/2|FAD/NAD(P)-binding domain| OP:NHOMO 263 OP:NHOMOORG 211 OP:PATTERN ------1111111121--------1------------------------------------------- -------------21----------1------2---1545---1-----11-----------1---2---1------------------------------------1----------------------1--------11--------------------------------------------------------------------1---------------------1----------------------------------------------------------------------------------------------21------------22--------------1-21-1-3--112--------11----------1------------------------------2---------------1--1------112-----------------------------------------------1----11--1223211111122112222-24111111--11------1--1----1---11---------------1-----------------1-----------2-------------------------------1-11-2-1111111211111121111--------------1---11111-1111---11111---1-11-111111---11111----------------1---111---1--------------------1111-1-11---------------11111-21----1111121-2-----223----------1---1111111111111-1--111--------111111------------------------------------------------- -----------------------111----------------------11---------111------------------------------------------------------------------------------------------------------------------------------------21211 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 483 STR:RPRED 74.8 SQ:SECSTR ##GGGGccEEETTEEEcccEEEccccccccTTTTcHHHHHHHHHHHHHTTccEEEEEEEEccTTcccTTcccEEcccHHHHHHHHHHHHHHHHTTcEEEEEEEccGGGcccTTTcccEEcccccccccTTcccEEccTTcccTTccccGGGccccccccccHHHHHHHHHHHHHHHHHTcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHTcTTcccGGGTTccEEEEcTTcccHHHHHHHHHHHHHGccccEEEEcccccccccccEEccccccccccEEEcTTccEEEcGGGHHHHHHHHHTTccccccTTccccTTccccEEEEcTTccEcccGGGccEEEEEEcccccccTTGGGGccEEEcccEcEEEETTcccEEccEHHHHHTTTcTTTTccHHHHHHHHTccTTcGGGcHHHHHHHHHHHHHTTccEEcHHHHHHHHHHHHHHHHHHHcHHEEEEcEEEEcccEEEccccc################################################################################################################################################################# PSIPRED ccccccccEEEccEEEcccEEEccccccccccccccHHHHHHHHHHHcccccEEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHcccEEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHccHHcccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEEcHHcccccccHHHHHHHHHHHHHccEEEEcccccccccccccccccccHHHHHHHHHHHcccEEEEcccccHHHHHHHHHccccEEEEcHHHHccHHHHHHHHccccccccccccHHHHHHcccccccEEEEHHHEEHHHHHHHccccccccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEccccccEEEEEcccccHHHHHHHHHHHHHHHcccEEEEccEEEHHHHHcccEEEEEEcccccccccccccccHHHcccccccccEEEEEEcccccccHHHHHHHHHHcccccEEEEEEcHHHHcccccccHHHHHHHHHccccEEEEccEEEEEEccccEEEEEEEEcccccEEEEEccEEEEEEEEccccHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHcccccccc //