[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57104.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  53/68 : Bacteria  871/915 : Eukaryota  190/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:260 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   60->249 1hdcA PDBj 4e-33 40.4 %
:RPS:PDB   59->237 1a9zA PDBj 6e-27 7.8 %
:RPS:SCOP  60->253 1pwxA  c.2.1.2 * 3e-34 24.2 %
:HMM:SCOP  6->245 1zemA1 c.2.1.2 * 5.8e-70 43.3 %
:RPS:PFM   63->171 PF00106 * adh_short 2e-09 40.4 %
:HMM:PFM   13->172 PF00106 * adh_short 5.1e-29 30.4 158/167  
:BLT:SWISS 60->249 HSD_STREX 8e-32 41.0 %
:PROS 141->169|PS00061|ADH_SHORT
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57104.1 GT:GENE BAD57104.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2435687..2436469 GB:FROM 2435687 GB:TO 2436469 GB:DIRECTION + GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD57104.1 LENGTH 260 SQ:AASEQ MDELAEPLRGVHALVTGAAGGIGGASADLLVAKGATVYLTDVDDAAGRDRARRLGPAAHYRHLDVTLEADWDAVVSEMAWAGNPLTVLVNCAGSALKAPLARTSLDQFRRMLDQHLVGTFLALRAAAGGMSDGGSVITVSSVRGVLATAELGAYGAAKFGVRALTRVAALELAERGIRVNSVCPGSIATDITEGPGFADDDVAAYVRTIPMLRRGSPREVAAVIAFLAGGDSGYVTGADILVDGGLAAGVRTPRLQTQKA GT:EXON 1|1-260:0| BL:SWS:NREP 1 BL:SWS:REP 60->249|HSD_STREX|8e-32|41.0|188/255| PROS 141->169|PS00061|ADH_SHORT|PDOC00060| SEG 17->27|gaaggiggasa| SEG 41->58|dvddaagrdrarrlgpaa| BL:PDB:NREP 1 BL:PDB:REP 60->249|1hdcA|4e-33|40.4|188/253| RP:PDB:NREP 1 RP:PDB:REP 59->237|1a9zA|6e-27|7.8|179/338| RP:PFM:NREP 1 RP:PFM:REP 63->171|PF00106|2e-09|40.4|109/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 13->172|PF00106|5.1e-29|30.4|158/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 60->253|1pwxA|3e-34|24.2|194/252|c.2.1.2| HM:SCP:REP 6->245|1zemA1|5.8e-70|43.3|240/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 13072 OP:NHOMOORG 1114 OP:PATTERN 112-23479797877517232-11B448456822---------21132--522-23112-11743123 HFR5b1-655B353U*nKK-Kv33c*KJKKKS****hx**4r9*KOC72A84PFJ73A11KKX3IIeVdSF-111--11195T11222666526211--53K48Af6Q7D11111111111111253234322354DCCHJ222F888AA4355244211533343DC8P4111111111111D97AB551H7KFFFFFGFGEFGFGHFNGKKFJFFG9GGIICC666664FW8555554555555549AAAA71915415-1-465556547878456434344432222222232222344444454444422211122254357A555444444564662675633117812286123324333235512C1BjHHR11111G9*dh578VPWWOFGIGEFHFIIS-GLQGEjFSWuY1uddMWUiwulpoWZDIDOLYQHOQIEK88888888QROB6ABA111111111112223312212221211116Dv*J6KkcSazqvtzsPSRSQggspSSTSDR*a*U*tc47LLKKAHDDTGVJie7A95545D41211111235KG75F47312212322314753C5393AACBLR322332122222223222222211322669A85ADC5LB2698797BBA886A7967671-2345811-111ADDB5H7CCCBCAAACC-CCDCB9ACBCCACABCCBAKRLC6569A78A99A9AA8898A9P9A9887A21999999999999111634233887838GKF111626111111352ABEGB4B496K9PRNOGMNZIJJOJIJFK6453344343345C656658969AIIHHIGEABC65551143886577--------1-3--------1-1------1-------32421656763B4 11--33E-622-499egUReSbRpjrbGGAGEFEFC7KFHCIIDFDONUaXgzuNSQJGHGH96D14417-1D59111115BAAB9-9-GcGgEWBEBEBA7BDCB-7O6*AHC9B66222385C9362Ee9-7883455876C5383349329676AISRE4TICE99C29QED4AA4h2238LCRLtXYDA9NDC7C ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 252 STR:RPRED 96.9 SQ:SECSTR #####GGcTTcEEEETTTTcHHHHHHHHHHHHTTcEEEEEEcccHHHHHHHHHHHHHTcEEEEccTTcHHHHHHHHHHTTccEEEEccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHTccEEEEEEEGGcccccccccTTccccccccHHHHHHHHHHHHHHHHHHHcTTcEEEEEEEcEEEcccTTcccccccccccccHHHHHHHHHTTccccEEEEcccccccccccEEccEEEEccccGGcccccccHH### DISOP:02AL 1-5, 256-260| PSIPRED cccccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHHHccEEEEEEcccccccccHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHccccEEEccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccEEEEEcccHHHcccccccccccc //