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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57106.1
DDBJ      :             putative transporter
Swiss-Prot:             

Homologs  Archaea  11/68 : Bacteria  291/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
f.58.1
:575 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   73->259 2onkC PDBj 9e-07 30.2 %
:BLT:PDB   383->511 3dhwA PDBj 2e-06 29.8 %
:RPS:PDB   191->225 3dhwA PDBj 7e-07 25.7 %
:RPS:PDB   475->506 3dhwA PDBj 4e-06 34.4 %
:RPS:SCOP  64->246 2r6gF2  f.58.1.1 * 3e-14 15.9 %
:RPS:SCOP  344->542 2r6gG1  f.58.1.1 * 1e-12 13.9 %
:RPS:PFM   179->249 PF00528 * BPD_transp_1 3e-06 39.4 %
:RPS:PFM   383->521 PF00528 * BPD_transp_1 2e-04 30.6 %
:HMM:PFM   92->290 PF00528 * BPD_transp_1 2.1e-17 26.0 169/185  
:HMM:PFM   386->564 PF00528 * BPD_transp_1 1.2e-11 20.0 170/185  
:BLT:SWISS 90->477 FBPB1_HAEIN 3e-22 25.1 %
:BLT:SWISS 475->542 FBPB_ECOLI 6e-04 29.4 %
:TM
:REPEAT 2|64->257|358->534
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57106.1 GT:GENE BAD57106.1 GT:PRODUCT putative transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2437619..2439346 GB:FROM 2437619 GB:TO 2439346 GB:DIRECTION + GB:PRODUCT putative transporter GB:PROTEIN_ID BAD57106.1 LENGTH 575 SQ:AASEQ MTATVVRPEAAPAEPAGNRRTFALPAHWRPRLGYAVLLAVLAYLVVLPMIRLQSLAFDDGGQGYRSQYTRFDIGETIRTTVALALGSLAIAMVLGTLLAYAASRLPDRLGFLRIVPILPIVLPAVANVVGWAFLLSPGPGYLNVLLRKLPWWSGTDSGPVDVYTVPWIIVLTGFGLTSFVYLFVSAGMQNIGAEHLEAAQISGSSTTGVFFRVVLPLLRPSLIYGGGIAFLLGLGQFTGPLLLGQNYGVQVLTTEMYRRVSESPADFAAAAAAGSPLVILGLALVLVQKALLGNQTRFVTHGGKAFAPGGGSSPLAVLALVAYALLALVVPLVGLVIVALTPYWSGSLSWEILTLDNFRTLAADAAIVESVVTSVTTSLGAVLICVPIGYLMATLLVRGKRYRVLAMIGDLITSLPLGIPAVIFGVGFLLTYTEPPLILYGTRTVIILVYVVLMLPFATRMQMTAMLALGDTYGEASATSGASPVVTTVRVMLPLMRPTILSAVALMFILLTHEFAASLLVRASTTQVMGTLLFDLWQNGSYPLVAAMALLMTAVTTVGVAAAMAVGGRNVLSKL GT:EXON 1|1-575:0| BL:SWS:NREP 2 BL:SWS:REP 90->477|FBPB1_HAEIN|3e-22|25.1|375/632| BL:SWS:REP 475->542|FBPB_ECOLI|6e-04|29.4|68/115| TM:NTM 12 TM:REGION 34->56| TM:REGION 80->102| TM:REGION 111->133| TM:REGION 166->188| TM:REGION 211->233| TM:REGION 267->289| TM:REGION 317->339| TM:REGION 368->390| TM:REGION 406->428| TM:REGION 438->460| TM:REGION 497->519| TM:REGION 546->568| NREPEAT 1 REPEAT 2|64->257|358->534| SEG 8->16|peaapaepa| SEG 34->47|yavllavlaylvvl| SEG 268->273|aaaaaa| SEG 315->340|lavlalvayallalvvplvglvival| SEG 370->378|svvtsvtts| SEG 544->568|lvaamallmtavttvgvaaamavgg| BL:PDB:NREP 2 BL:PDB:REP 73->259|2onkC|9e-07|30.2|172/252| BL:PDB:REP 383->511|3dhwA|2e-06|29.8|121/203| RP:PDB:NREP 2 RP:PDB:REP 191->225|3dhwA|7e-07|25.7|35/203| RP:PDB:REP 475->506|3dhwA|4e-06|34.4|32/203| RP:PFM:NREP 2 RP:PFM:REP 179->249|PF00528|3e-06|39.4|71/195|BPD_transp_1| RP:PFM:REP 383->521|PF00528|2e-04|30.6|134/195|BPD_transp_1| HM:PFM:NREP 2 HM:PFM:REP 92->290|PF00528|2.1e-17|26.0|169/185|BPD_transp_1| HM:PFM:REP 386->564|PF00528|1.2e-11|20.0|170/185|BPD_transp_1| GO:PFM:NREP 6 GO:PFM GO:0005215|"GO:transporter activity"|PF00528|IPR000515| GO:PFM GO:0006810|"GO:transport"|PF00528|IPR000515| GO:PFM GO:0016020|"GO:membrane"|PF00528|IPR000515| GO:PFM GO:0005215|"GO:transporter activity"|PF00528|IPR000515| GO:PFM GO:0006810|"GO:transport"|PF00528|IPR000515| GO:PFM GO:0016020|"GO:membrane"|PF00528|IPR000515| RP:SCP:NREP 2 RP:SCP:REP 64->246|2r6gF2|3e-14|15.9|182/244|f.58.1.1| RP:SCP:REP 344->542|2r6gG1|1e-12|13.9|197/284|f.58.1.1| OP:NHOMO 490 OP:NHOMOORG 302 OP:PATTERN ---------------12------1-----12------1-11--------------1-3--1------- -1-14---111----11-1-1----111111-11112124---2-43-----111---------1-13341----1221---1--------------------------------------------------------21---11---------11---------1----------------21--111-1--22222122-1111113-22-1112-1--1--11111-33--------------------1-----------------------------------11111111111------------------------1-------------------1-31---3-------1--11--2111-1---------------312--1-1-1122222221224------1-141--74425635456631----351111431--------------13-----------------------------------13212111212--11-11111111-23121-----2221-1--1-3123--------1-1-------------1---1---1111-------1-------------------------------------------1----------------------1-----1-------1141-2--11--------1-----1---1--------32322121-1---------1-1--2---------122112222222---------------114122311--1-11112----------111111113231112-122-------------111111---11-----------------1--------------------------1----------------221112121-1- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 362 STR:RPRED 63.0 SQ:SECSTR ########################################################################HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH#HHHHccHH##HHHHHHHHHHcTTcT##########TTTTcccccTTcHHHHHHHHHHHHHHHHHHHHHHHHHHccTTTTTHHHHHTccTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHccHHHHTTc##cccccHHHHHHHH#####################################################################################HHHHHTTTTTHHHHHHHHHcHHHHHHHHHHHHHHHHHHHTTGGGGGGGccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHTTcccccHHHHHHHHHHHHHHHHHHHHHHHccTTTTTHHHHHTccTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHccHH#HHTTccccccHHHHHHH######################################## DISOP:02AL 6-20, 293-313| PSIPRED cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc //