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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57107.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  43/68 : Bacteria  843/915 : Eukaryota  187/199 : Viruses  0/175   --->[See Alignment]
c.15.1c.2.1
:257 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->253 1nffA PDBj 1e-29 34.6 %
:RPS:PDB   1->255 1dohB PDBj 1e-30 21.8 %
:RPS:SCOP  1->38 1l7bA  c.15.1.2 * 1e-04 28.9 %
:RPS:SCOP  12->255 1pwxA  c.2.1.2 * 7e-33 18.3 %
:HMM:SCOP  6->253 1zemA1 c.2.1.2 * 2.5e-72 45.3 %
:RPS:PFM   11->177 PF00106 * adh_short 3e-14 38.8 %
:HMM:PFM   11->177 PF00106 * adh_short 6.7e-29 27.2 162/167  
:BLT:SWISS 7->255 CPNA_COMTE 2e-29 33.3 %
:PROS 149->177|PS00061|ADH_SHORT
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57107.1 GT:GENE BAD57107.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2439381..2440154 GB:FROM 2439381 GB:TO 2440154 GB:DIRECTION + GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD57107.1 LENGTH 257 SQ:AASEQ MAPGADRLRDKTVLVTGASGGIGVEIVRRLAAEGAVVIATDATAATTAACAELLAGLTEPDRHLALRLDVSDEQDWRSATETVEARFGGLDALVNNGAIGSIATVVDEELDRFQRVVEVGQLGTWLGMKHAGALVERSGGGSIVNMCSILGTVGGMGNSVAYAAAKGAVRTMTKNAALHWARRGVRVNSIHPGFIGTAQLLERYAGSERHAAMLAGTPMGRLGRAEEVAAAVAFLAGDDATYLTGAELYVDGGWTCA GT:EXON 1|1-257:0| BL:SWS:NREP 1 BL:SWS:REP 7->255|CPNA_COMTE|2e-29|33.3|246/250| PROS 149->177|PS00061|ADH_SHORT|PDOC00060| SEG 39->58|atdataattaacaellaglt| SEG 221->240|rlgraeevaaavaflagdda| BL:PDB:NREP 1 BL:PDB:REP 7->253|1nffA|1e-29|34.6|234/244| RP:PDB:NREP 1 RP:PDB:REP 1->255|1dohB|1e-30|21.8|252/271| RP:PFM:NREP 1 RP:PFM:REP 11->177|PF00106|3e-14|38.8|165/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 11->177|PF00106|6.7e-29|27.2|162/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 2 RP:SCP:REP 1->38|1l7bA|1e-04|28.9|38/92|c.15.1.2| RP:SCP:REP 12->255|1pwxA|7e-33|18.3|235/252|c.2.1.2| HM:SCP:REP 6->253|1zemA1|2.5e-72|45.3|245/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 9693 OP:NHOMOORG 1073 OP:PATTERN 111-114344544452-6-2---1611635472----------21-43--322-11----22633-32 CFM1Q2-422815-TdXHH-HX33PrHGHHHLefjgSg**4Q6mAEB2-B5-JBC72611A7G1FEPMQH81----111286T1----455414121--63D17AU4R5E1111111---1111221132411463BAACB22285659A2142322221322241AB7K21-1111111111B8567551F4F99999BBB9BC9BBAIDFFBH9A99FGKGB9544454CS5444443344444437775861815714-1-7855665544773355456535343333333343334455555555554333111333753568333322352652551465621113812155113224332226522819UDDH12111C4kRO237MEGIEBCEDACEDEEO-ADHC9WBMTaN1hOOGTORnhegXJU9G8GDOFAEGE8F22222222EHG848C7222222221112--22-----1--1111138cnE5AOKCPcTYdccGIHIGWWhdKKJK8KmLuOmeR26KJGIAD99IARFXX7C62323633322222333HD62E5421111-222214551B42637875BJ111211111111122222222231222448887AAA6F844666659A766455745451-23338-1----79AA5A59BB8999998-B89A989999B88889988GJG843698566778778767667M7866659118777777777771-1635323888828EIB222414111111351CDFGE6B4A9J7IJHIBHITHCBGFFHEH6332243231456965665595787AAACA934422121121998788--------1-3----1-----1--------------3242155555392 ----A58-1-1-378MOLIMJOJXVWOAA5AAAB9A6KCFCFG998HHMNOThcDLHBAB7964715625215441-21235559627-9P9O6J57875519GC8-BG7vGJCAE53-512C4F91B1GW9-9AB2354A66I927524D12A766BJNPH7KD7C8BEN7FDE4593W2228BDLNlJXB4684536 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 257 STR:RPRED 100.0 SQ:SECSTR ccGGGGccTTcEEEETTTTcHHHHHHHHHHHHTTcEEEEEEcccHHHHHHHHHHHHHcTTccEEEEEccTTcHHHHHHHHHHHHHHHccccEEEEcccccccccGGGccHHHHHHHHHHHTHHHHHHHHHHHHHccTTcEEEEEEccGGGTccccccccHHHHHHHHHHHHHHHHHHHHHGGGTcEEEEEEEcccccHHHHHHGGGGcTHHHHHHccTTcccccHHHHHHHHHHHHcGGGTTccccEEEEccccccc DISOP:02AL 1-4| PSIPRED cccccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHHHHHHHccccEEEEcccccccccHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccEEEHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccEEEEEccccccc //