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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57113.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  53/68 : Bacteria  876/915 : Eukaryota  191/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:257 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   10->256 1vl8B PDBj 2e-38 36.6 %
:RPS:PDB   11->256 3d3wA PDBj 2e-34 28.8 %
:RPS:SCOP  18->255 1pwxA  c.2.1.2 * 1e-42 21.4 %
:HMM:SCOP  10->253 1zemA1 c.2.1.2 * 4.9e-78 49.4 %
:RPS:PFM   16->181 PF00106 * adh_short 3e-14 40.2 %
:HMM:PFM   17->179 PF00106 * adh_short 1.2e-28 28.0 157/167  
:BLT:SWISS 11->257 KDUD_DICD3 2e-31 32.7 %
:PROS 149->177|PS00061|ADH_SHORT
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57113.1 GT:GENE BAD57113.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2444824..2445597) GB:FROM 2444824 GB:TO 2445597 GB:DIRECTION - GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD57113.1 LENGTH 257 SQ:AASEQ MSESAFLDTMFGLHGRVAVVTGASSGLGLGFARTLAGAGATVYAAARRLDRLDALAAENPRIVPVRCDVTADADRRALVDRCHAEHGRLDVLVNNAGRPGPPHAEEETAAGFAAILEVNLLAGFHLATYAATRLPAGERASYINIASVVGLVSTAPIGGASYAASKAGTLGLTRELAGQWGRRGIRVNAVVPGWFDTEMTDGLFDNEKSAGWVRRNTMLGRGGAPGEVDGAVLFLASDASSYVTGQTLVVDGGWTAR GT:EXON 1|1-257:0| BL:SWS:NREP 1 BL:SWS:REP 11->257|KDUD_DICD3|2e-31|32.7|245/253| PROS 149->177|PS00061|ADH_SHORT|PDOC00060| SEG 34->57|tlagagatvyaaarrldrldalaa| BL:PDB:NREP 1 BL:PDB:REP 10->256|1vl8B|2e-38|36.6|246/252| RP:PDB:NREP 1 RP:PDB:REP 11->256|3d3wA|2e-34|28.8|240/243| RP:PFM:NREP 1 RP:PFM:REP 16->181|PF00106|3e-14|40.2|164/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 17->179|PF00106|1.2e-28|28.0|157/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 18->255|1pwxA|1e-42|21.4|234/252|c.2.1.2| HM:SCP:REP 10->253|1zemA1|4.9e-78|49.4|241/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 13825 OP:NHOMOORG 1120 OP:PATTERN 1121244686867664-8243121A448475722---------21131--322-23-12-22753132 FGW5d2-344A252Y*qLL-Lw22d*LKLLLU****jw**6tB*NKB53A93OHH74911LJW4HGYUcQD11112121186W11223766626221--62J39Af8T9H11111111111111243136221553EBBJJ222FB68A95453322211522152C96N3111131131111DB789651H6LDDDDDFCFECEDFGCLFMMFIDCD9FHJKFB566664GZ744444344444443899AA71B17815111684478557888434656565643344444454444566665676666634411144474358C5554444546746626756331188222A6123324333335522A1GiIIU11211I8*fe67BZQXVOIJKJHIKIKKR-IKUJGoFOWuZ1xeeLYTg*uuonVbDMCMMWRHPSLGN77777777RSRA6CC9111111111112223312212221211116Ew*K7JlbQdwmrwvsRTSTQjjxvVUUUCT*V*V*wi47PSMKAKFFXIXMpk8F95958B51111111348OH75I66312111422324853F63839A99GN322332233113212111112142322669867BCD5H93688897AC9887A7A68671-2444911-1119CEB5I7BCC9BAAABB-CBCBBAABBBCABAABBA9JPKC7679A68998A9AA889898R9A8987B218AAAAAA9A9AA1114342339A893AJND111517122221351EFGHF5E6A7N8RSOPGMPaIIJNJIMKL4222242223345B434437A467JLJHKGEBCD65551153887677--------1-3--------1-1------1-------32421656763A3 11--44B-522-39AorbahajXwtviLNCHEGIIGGRKNFONHGFRSYhgq**RXVLOMIK99F2472921A86213134A9ADA-9-LZJrFaEHEGDCDEEDC-AV9*ELCCD942414B6E9182GdB-AAB5446A57D717445B23A867CMRNI6VKDD96BBBOIC4BA4h233AMGXQxagHCBRDEBB ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 257 STR:RPRED 100.0 SQ:SECSTR cTTTHHHHTTcccTTcEEEEEcTTcHHHHHHHHHHHHTTcEEEEEEccHHHHHHHHHHHHHHcTTcEEEEccTTcHHHHHHHHTTcccccEEEEcccccccccGGGccHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTccEEEEEEccGGTcccccTTcHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEcccTTTTHHHHcccTTHHHHHHHTcTTcccccHHHHHHHHHHHHcGGGTTccccEEEEcTTGGGc DISOP:02AL 1-8| PSIPRED cccccccHHHHcccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHHHcccEEEEEcccccccccHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccEEEHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHccHHHcccccEEEEEccccccc //