Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57114.1
DDBJ : putative short chain dehydrogenase
Swiss-Prot:
Homologs Archaea 55/68 : Bacteria 868/915 : Eukaryota 185/199 : Viruses 0/175 --->[See Alignment]
c.2.1
:251 amino acids
:SECSTR
:PSIPRED
:BLT:PDB 4->249 1vl8B PDBj 2e-32 36.7 %
:RPS:PDB 4->249 2ae1A PDBj 4e-38 26.3 %
:RPS:SCOP 10->250 1pwxA c.2.1.2 * 2e-42 20.5 %
:HMM:SCOP 1->246 1zemA1 c.2.1.2 * 1.6e-81 45.7 %
:RPS:PFM 8->175 PF00106 * adh_short 3e-15 40.4 %
:HMM:PFM 9->176 PF00106 * adh_short 6e-33 32.1 162/167
:BLT:SWISS 5->246 FABG_THEMA 1e-32 39.6 %
:PROS 145->173|PS00061|ADH_SHORT
:SEG
SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57114.1
GT:GENE BAD57114.1
GT:PRODUCT putative short chain dehydrogenase
GT:DATABASE GIB00210CH01
GT:ORG nfar0
GB:ACCESSION GIB00210CH01
GB:LOCATION complement(2445610..2446365)
GB:FROM 2445610
GB:TO 2446365
GB:DIRECTION -
GB:PRODUCT putative short chain dehydrogenase
GB:PROTEIN_ID BAD57114.1
LENGTH 251
SQ:AASEQ MNTDLTGRVALVTGASRGLGLAIARGLKQAGATVIVSSRKLDSCERAVATLADVPTGAAHPLALHVGQWDTIEPAVDAIIAEFGSLDIVVNNAGIAPLAPNLAAVGEGLWDKTLEVNLKGPFRLMAVAGARMAAAGGGSIVNISSIGAERPSPPEAMYAAAKNGLNALTRAFAQEYAPTVRVNCVMPGGFATDMAEHWDEEFVGKIVDRLPAGRLGRPEEIAGIVVHLASDAAGYTTGALIPVDGGRTAVY
GT:EXON 1|1-251:0|
BL:SWS:NREP 1
BL:SWS:REP 5->246|FABG_THEMA|1e-32|39.6|240/246|
PROS 145->173|PS00061|ADH_SHORT|PDOC00060|
SEG 126->148|avagarmaaagggsivnissiga|
BL:PDB:NREP 1
BL:PDB:REP 4->249|1vl8B|2e-32|36.7|245/252|
RP:PDB:NREP 1
RP:PDB:REP 4->249|2ae1A|4e-38|26.3|243/252|
RP:PFM:NREP 1
RP:PFM:REP 8->175|PF00106|3e-15|40.4|166/169|adh_short|
HM:PFM:NREP 1
HM:PFM:REP 9->176|PF00106|6e-33|32.1|162/167|adh_short|
GO:PFM:NREP 2
GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198|
GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198|
RP:SCP:NREP 1
RP:SCP:REP 10->250|1pwxA|2e-42|20.5|234/252|c.2.1.2|
HM:SCP:REP 1->246|1zemA1|1.6e-81|45.7|243/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains|
OP:NHOMO 10638
OP:NHOMOORG 1108
OP:PATTERN 11212325A8A89854172511218337476711---------11-43--422-24122232534123 CGT4U1-433A161RkaCC-Cd11S*CBCCCIipsrab**4b9tJDB42A91HCF53711AFR4GDRSVLB1---1111166Q11222553614121--52H3ABg8R7G1111111111111116536A423575C99CG222C8E79A4363422111424272BB8M41-2132211122DA878661E7E99999BBBABAACD8IAEEBE99A6BEIGB6565564CV544333324444443666A882A255241217A5577445443223434333322222222222222233333333333312222122244355B333333343583442354523116622254123324333345513C2DYDDH22222J9sYZ56DUKRNJIHJHHHJHJIQ-EHLEDcDMOfR2qbbKWRdwrghbRRAKBIFMLEILCBD55555555LKIB57A71111111111--2233222122212111159bwF8GbSLPpdhikjLNLNKXXkkOOONAPzUsMnXT48NMIF7DADFCXFYZA953627751111111439HB45C4531211-422324653B43734786HO331221111111111111111121212778884ACA8H747877889B766696887541-2243811-11199EA6E79BB9999999-B898989AAAB89999A99HMFB76998667788778667678M8966659317AAAAAAAAAAA111634233766738CIA1115171111112419ABDB296A7J8MMFKEIKRFFGLJDIEI3332243231456C6566567789DCIFHED9BC53332342997656--------1-3----1-----1--------------3331165676291 11--62B-1-1-489FSIHTORIaVWREE6AAA8A87E9D8CD799GEGOQTkgAGEAA96744824517--735---1-3445B615-DKBS8H87976655AA6-9C5pBCBCB94321373C82C3PoB-BAC4161D54B536245932E5767ELOH5OFCDD895CO8A4663p4325DBJHOIX896B5427 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
STR:NPRED 251
STR:RPRED 100.0
SQ:SECSTR cccccTTcEEEEETcccHHHHHHHHHHHTTTcEEEEEEccHHHHHHHHHHHHHTTTccEEEEEccTTcHHHHHHHHHHHHHHTTTcccEEEEcccccccccGGGccHHHHHHHHHHHTHHHHHHHHHHHHHHHTTccEEEEEEccGGGTcccTTcHHHHHHHHHHHHHHHHHHHHTGGTEEEEEEEEcccccccTTHHHHHHHHHHHHTccccccccHHHHHHHHHHHHcGGGTTccccEEEEcTTGGGHc
PSIPRED ccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEccccccccccHHHccHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHHcHHHccccccEEEEcccHHHcc
//
[GTOP]
