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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57128.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  42/915 : Eukaryota  30/199 : Viruses  0/175   --->[See Alignment]
c.69.1
:412 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   29->283 3f98A PDBj 9e-09 25.5 %
:RPS:PDB   66->240 2b4kA PDBj 2e-08 14.3 %
:RPS:SCOP  129->240 1pv1A  c.69.1.34 * 9e-08 17.9 %
:HMM:SCOP  29->351 1jfrA_ c.69.1.16 * 4.5e-22 31.1 %
:RPS:PFM   115->283 PF03403 * PAF-AH_p_II 6e-16 35.8 %
:HMM:PFM   31->168 PF03403 * PAF-AH_p_II 9.3e-09 24.0 125/381  
:HMM:PFM   224->384 PF03403 * PAF-AH_p_II 5.1e-11 28.1 128/381  
:HMM:PFM   131->252 PF01738 * DLH 1.1e-07 27.4 106/217  
:BLT:SWISS 71->377 PAFA_CAVPO 8e-10 26.1 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57128.1 GT:GENE BAD57128.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2458550..2459788 GB:FROM 2458550 GB:TO 2459788 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD57128.1 LENGTH 412 SQ:AASEQ MTRRRSVVAVAAVTAVATVAVAVAAALVFPTFRLPAPTGAHPVGTTTLHLVDAERREVFGPDPTAPRELMVQVWYPARDTDGSLAPLVPGGTAVTEQIARGFGLPARGLDYLTEIPTHARANVPIADSGHPFPVVLLNHGYGSARFYHTSLAEDLAAHGYAVFAIDHTYSTRATALPGGRLATMRTDEDRIGEPDYRDEVGQVWTADVTAVLDRLPALNADPRFAGRLDTGRVGVVGHSFGGAAAYDAAYDPRVTTGIDLDGTLYRFRDRAPLAEPFLFVYSEQAFDLYDRVRRGHVYSDAELAELGASRAEVDRDTAVARRELEHLRAAARAGSPILYVRGTAHNNFMDQQYFSPLLRTLGLIGDIAPERAGAIVNDIVRGFLGAGLRGGGLPDLPGRYPEIVDVTERFAG GT:EXON 1|1-412:0| BL:SWS:NREP 1 BL:SWS:REP 71->377|PAFA_CAVPO|8e-10|26.1|276/436| TM:NTM 1 TM:REGION 9->31| SEG 7->26|vvavaavtavatvavavaaa| SEG 241->251|ggaaaydaayd| SEG 318->333|avarrelehlraaara| SEG 381->401|rgflgaglrggglpdlpgryp| BL:PDB:NREP 1 BL:PDB:REP 29->283|3f98A|9e-09|25.5|243/377| RP:PDB:NREP 1 RP:PDB:REP 66->240|2b4kA|2e-08|14.3|154/617| RP:PFM:NREP 1 RP:PFM:REP 115->283|PF03403|6e-16|35.8|148/216|PAF-AH_p_II| HM:PFM:NREP 3 HM:PFM:REP 31->168|PF03403|9.3e-09|24.0|125/381|PAF-AH_p_II| HM:PFM:REP 224->384|PF03403|5.1e-11|28.1|128/381|PAF-AH_p_II| HM:PFM:REP 131->252|PF01738|1.1e-07|27.4|106/217|DLH| GO:PFM:NREP 2 GO:PFM GO:0003847|"GO:1-alkyl-2-acetylglycerophosphocholine esterase activity"|PF03403|IPR005065| GO:PFM GO:0016042|"GO:lipid catabolic process"|PF03403|IPR005065| RP:SCP:NREP 1 RP:SCP:REP 129->240|1pv1A|9e-08|17.9|106/290|c.69.1.34| HM:SCP:REP 29->351|1jfrA_|4.5e-22|31.1|209/260|c.69.1.16|1/1|alpha/beta-Hydrolases| OP:NHOMO 88 OP:NHOMOORG 72 OP:PATTERN -------------------------------------------------------------------- ----3--------------------1----------3-----------------------21-----221----------------------------------------------------------------------------1--1---------------1------------------1---------1111121--11111111----11----1------------------------------------------------------------------------------------------------------------------1-2-------------------------------------------------------------------------------------------------1---------1-----------------------------------------------------------------------------------------------------1---------------------------------------------------1-------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------1111------------------------------------------------------------------------------------------------------------1- ---------------1----1111111------2-1----------11111123-111-------------------------------------------------12------------------------------------------------------1---------------111---1---2--------1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 268 STR:RPRED 65.0 SQ:SECSTR ############################cccccccccccccEEEEEEEEEccccTTcEEEEEEEcTTTcccccccccccccTHHHHccEEEEEEEEEcTTccEEEEEHHHHEEEETTcccEEEEEEEEccHHHHTcccTTcccHHHHccGGGHHHHHHTcEEEEEEcTcccccEEEEcTcTTccccccTTcccccTTccccccHHHHHHHHHHHHHHHHHEEHHHcTTEEEEEEEEEEEHHHHHHHHHHHccTTEEEEEEEccccccccTTccHHHHHHHcGGGHHHHHHTcTTHH#################################################################################################################### DISOP:02AL 1-2, 411-412| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEcccccccccccccccEEEEEEEEEEcccccccccccccccHHHHHHHHHHHcccHHHHHHccEEEEEEEEcccccccccccEEEEEEccccccHHHHHHHHHHHHHccEEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEcHHHHHHHHHHccccEEEEEEEcccccccccccccccEEEEEEccccccHHHHHcccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccEEEEcccccccccccHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHcccc //