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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57129.1
DDBJ      :             putative DNA-binding protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  83/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.35.1
:287 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   13->68 2b5aC PDBj 7e-05 35.7 %
:RPS:PDB   13->69 2axuF PDBj 4e-12 23.6 %
:RPS:SCOP  13->71 1y7yA1  a.35.1.3 * 9e-11 35.6 %
:HMM:SCOP  8->85 1x57A1 a.35.1.12 * 2.8e-12 25.6 %
:RPS:PFM   18->69 PF01381 * HTH_3 2e-04 38.5 %
:HMM:PFM   18->70 PF01381 * HTH_3 6.9e-12 35.8 53/55  
:BLT:SWISS 12->116 RGHRB_BACSU 5e-06 36.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57129.1 GT:GENE BAD57129.1 GT:PRODUCT putative DNA-binding protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2459735..2460598) GB:FROM 2459735 GB:TO 2460598 GB:DIRECTION - GB:PRODUCT putative DNA-binding protein GB:PROTEIN_ID BAD57129.1 LENGTH 287 SQ:AASEQ MAATSKRPVTDSRVGALLREWRQRRRLSQLDLALLADTSARHLSYVETGRSRPSRAMVLRLCAALDVPLRDRNTLLLAADHAPAYRESDLHDVSLAPVRAALETMLTAHEPYPAVVVDRLWNVLLGNAAMPILTAGLPPHLLEPAPNVYRMVLHPQGLAARLVNHAQVRRLFLERLTRQIAGSDDPALRALHREVESYPEPPEDLAAPAPPSPFEVPIRIRTPAGELAMFSTMATFGAPADVTLSELAIELFYPLDDFTAAVLRAATPADSARETLGDVHDLGVPAG GT:EXON 1|1-287:0| BL:SWS:NREP 1 BL:SWS:REP 12->116|RGHRB_BACSU|5e-06|36.6|93/139| SEG 199->213|peppedlaapappsp| BL:PDB:NREP 1 BL:PDB:REP 13->68|2b5aC|7e-05|35.7|56/76| RP:PDB:NREP 1 RP:PDB:REP 13->69|2axuF|4e-12|23.6|55/297| RP:PFM:NREP 1 RP:PFM:REP 18->69|PF01381|2e-04|38.5|52/55|HTH_3| HM:PFM:NREP 1 HM:PFM:REP 18->70|PF01381|6.9e-12|35.8|53/55|HTH_3| GO:PFM:NREP 1 GO:PFM GO:0043565|"GO:sequence-specific DNA binding"|PF01381|IPR001387| RP:SCP:NREP 1 RP:SCP:REP 13->71|1y7yA1|9e-11|35.6|59/69|a.35.1.3| HM:SCP:REP 8->85|1x57A1|2.8e-12|25.6|78/0|a.35.1.12|1/1|lambda repressor-like DNA-binding domains| OP:NHOMO 98 OP:NHOMOORG 83 OP:PATTERN -------------------------------------------------------------------- ----2----------------1---1------1111112--213-2--------------11--1-1112--------------------------------------------------------------------------1-1---------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------211---1-111----------1----------11-211----11211---1---------11-------------------------------------------------2------111111-----1121------2121111--11---1111-1-1--------------------------------1---------------2--11--------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------1-11111------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 137 STR:RPRED 47.7 SQ:SECSTR HHTTccccccHHcHHHHHHHHHHHTTccHHHHHHHTTTcHHHHHHHHTTcccccHHHHHHHHHHHTccHHHHHHHHHHHHHHHHHHHTcHHHHHHHHccccHHHHH####HHHHHHHTccEEEEEEEEEEEEEEEEcTTcc################################################################################################################################################## DISOP:02AL 1-13, 87-92| PSIPRED cccccccccccHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHHcccHHHHccccccEEHHHHccHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHHHHccccccccccccEEEEEcccHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHcccccc //