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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57134.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  58/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:250 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   34->190 3b6aA PDBj 9e-15 31.8 %
:RPS:PDB   35->239 3b6aA PDBj 8e-15 29.0 %
:RPS:SCOP  28->89 2oi8A1  a.4.1.9 * 8e-11 24.2 %
:RPS:SCOP  101->245 2g7lA2  a.121.1.1 * 8e-16 14.8 %
:HMM:SCOP  31->89 2g7lA1 a.4.1.9 * 9.5e-12 42.4 %
:HMM:SCOP  100->247 2g7gA2 a.121.1.1 * 7.8e-29 40.0 %
:RPS:PFM   101->240 PF02909 * TetR_C 1e-12 41.5 %
:HMM:PFM   98->242 PF02909 * TetR_C 2.1e-30 32.1 134/139  
:HMM:PFM   39->83 PF00440 * TetR_N 1.5e-15 42.2 45/47  
:BLT:SWISS 22->249 Y1388_MYCBO 1e-09 25.9 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57134.1 GT:GENE BAD57134.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2463539..2464291 GB:FROM 2463539 GB:TO 2464291 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57134.1 LENGTH 250 SQ:AASEQ MTTTEASGRGDLARTLDLLWNTGPRPSRGPKPTLTLDRIVEAAVRVADAEGLAAVTMRRVAAELGTGAMSLYRYVPGKAELLDLMLDRVQYPDEEVDADADWRETLRFYAHQTLELYRRHPWLLQVNQTRPVLGPGALANMELLMGRIMPMKLSDPELVSVLVMVESYVAGAARTQLYQRDAERSTGMTDAEFWQAQAPVLEQAMASGRYPVMASLSAAAFDPAFEHFEFGLQRVLDGLEVLVARRAQAE GT:EXON 1|1-250:0| BL:SWS:NREP 1 BL:SWS:REP 22->249|Y1388_MYCBO|1e-09|25.9|220/261| BL:PDB:NREP 1 BL:PDB:REP 34->190|3b6aA|9e-15|31.8|157/213| RP:PDB:NREP 1 RP:PDB:REP 35->239|3b6aA|8e-15|29.0|200/213| RP:PFM:NREP 1 RP:PFM:REP 101->240|PF02909|1e-12|41.5|130/140|TetR_C| HM:PFM:NREP 2 HM:PFM:REP 98->242|PF02909|2.1e-30|32.1|134/139|TetR_C| HM:PFM:REP 39->83|PF00440|1.5e-15|42.2|45/47|TetR_N| GO:PFM:NREP 2 GO:PFM GO:0016481|"GO:negative regulation of transcription"|PF02909|IPR004111| GO:PFM GO:0016566|"GO:specific transcriptional repressor activity"|PF02909|IPR004111| RP:SCP:NREP 2 RP:SCP:REP 28->89|2oi8A1|8e-11|24.2|62/79|a.4.1.9| RP:SCP:REP 101->245|2g7lA2|8e-16|14.8|128/133|a.121.1.1| HM:SCP:REP 31->89|2g7lA1|9.5e-12|42.4|59/0|a.4.1.9|1/1|Homeodomain-like| HM:SCP:REP 100->247|2g7gA2|7.8e-29|40.0|130/0|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain| OP:NHOMO 174 OP:NHOMOORG 58 OP:PATTERN -------------------------------------------------------------------- ----B--1------422----2--11-----13343CC66-536381------131-2--231-4198961-------1-1-------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------1-----111111111---------------------------------------------------------------1----------1------------------------------------------------------------------------------------------13------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------11----------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 221 STR:RPRED 88.4 SQ:SECSTR #####################cTHHHHcccHHHHcTTHHHHHHHHHHHHHcGGGccHHHHHHHTTccHHHHHHHHccHHHHHHHHHHHHGGGcccccccTcHHHHHHHHHHHHHHHHHHcTTHHHHHHTcccccHHHHHHHHHHHHHHHTTTccHHHHHHHHHHHHHHHHHHHHHHHTcccTTHHHHHHHHHHHHHHHHHHHTccTTTcHHHHHTHHHHHcccHHHHHHHHHHHHHHHHHHH######## DISOP:02AL 1-38, 247-250| PSIPRED ccccccccccccccHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHccccccEEcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccc //