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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57136.1
DDBJ      :             putative two-component system response regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  518/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.6c.23.1
:217 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->186 1a04A PDBj 3e-13 32.0 %
:BLT:PDB   158->199 2jpcA PDBj 2e-04 38.1 %
:RPS:PDB   5->201 3c3wB PDBj 1e-20 28.2 %
:RPS:SCOP  2->197 1s8nA  c.23.1.1 * 2e-11 16.9 %
:HMM:SCOP  3->146 1a04A2 c.23.1.1 * 1.8e-13 27.6 %
:HMM:SCOP  133->198 1p4wA_ a.4.6.2 * 8e-15 42.4 %
:RPS:PFM   155->197 PF00196 * GerE 2e-08 58.1 %
:HMM:PFM   153->199 PF00196 * GerE 1.1e-18 48.9 47/58  
:HMM:PFM   7->112 PF00072 * Response_reg 7.9e-15 28.7 101/112  
:BLT:SWISS 5->199 NREC_STAHJ 5e-19 32.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57136.1 GT:GENE BAD57136.1 GT:PRODUCT putative two-component system response regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2465740..2466393 GB:FROM 2465740 GB:TO 2466393 GB:DIRECTION + GB:PRODUCT putative two-component system response regulator GB:PROTEIN_ID BAD57136.1 LENGTH 217 SQ:AASEQ MSAPLRIVIAEDSAILRDGLAGLLTERGHEVVAMVGEAGSLSDVVGEHNPDVAVVDVRMPPTFTDEGLLAAIELRRKYPMTGVLVFSQWIETRYATELLAGGAGGVGYLLKDRVADVRDFVGALYRVATGGTALDPEVVSQLMGASRQQDHLARLTPREREVLELMAQGLSNNAIAASLTVTERAVEKHIGNIFTKLDLPPSDTHHRRVLAVLRLKG GT:EXON 1|1-217:0| BL:SWS:NREP 1 BL:SWS:REP 5->199|NREC_STAHJ|5e-19|32.3|189/217| SEG 98->110|llaggaggvgyll| BL:PDB:NREP 2 BL:PDB:REP 4->186|1a04A|3e-13|32.0|172/205| BL:PDB:REP 158->199|2jpcA|2e-04|38.1|42/61| RP:PDB:NREP 1 RP:PDB:REP 5->201|3c3wB|1e-20|28.2|188/210| RP:PFM:NREP 1 RP:PFM:REP 155->197|PF00196|2e-08|58.1|43/57|GerE| HM:PFM:NREP 2 HM:PFM:REP 153->199|PF00196|1.1e-18|48.9|47/58|GerE| HM:PFM:REP 7->112|PF00072|7.9e-15|28.7|101/112|Response_reg| GO:PFM:NREP 4 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00196|IPR000792| GO:PFM GO:0005622|"GO:intracellular"|PF00196|IPR000792| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00196|IPR000792| GO:PFM GO:0043565|"GO:sequence-specific DNA binding"|PF00196|IPR000792| RP:SCP:NREP 1 RP:SCP:REP 2->197|1s8nA|2e-11|16.9|189/190|c.23.1.1| HM:SCP:REP 3->146|1a04A2|1.8e-13|27.6|134/0|c.23.1.1|1/1|CheY-like| HM:SCP:REP 133->198|1p4wA_|8e-15|42.4|66/0|a.4.6.2|1/1|C-terminal effector domain of the bipartite response regulators| OP:NHOMO 1320 OP:NHOMOORG 518 OP:PATTERN -------------------------------------------------------------------- 3682Q31211121-44322-24--3A222222A555A98A2A5R9A432543353115--2595I7DHMI8----1---22-7----------------1-1-22121-1--------------------------67789323E471-211------------1-5324-------------35311--2233333333442533343743334355132432222222265333333333333333233321---22-1---22--222-----11112212122221111212121211111111111112-1222111215151-----1----1-------2-1--8111-32112122-11111---4-11----------2-2--1321211111111111--11213321-41-311121-23221-1------------------------1-2---------------------------------2---31---2225331222211243333144232442--23334211221121-2-23141-1111111---111-14---12-12--1-2-1-1432-1111-221---------------------------2-----2-1-----1---1111---11--1----111------2-11-312332212122-3222221222312222222111331112222222222222222122222221-211111111111--11-----------1--111--1--------1------------32323122422211222-------------211111-22111122322111------1---1111--------1-------------------------------------2B- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 214 STR:RPRED 98.6 SQ:SECSTR cTHHEEEEEEcccHHHHHHHHHHHHTcTTEEEHHEEEEccHHHHHHHHcccEEEEccEETTEEHHHHHHHHHHHHHHcTTcEEEEGGGcccHHHHHHHHHHTcccHHHHHcTTcHHHHHHHHHHHHHHHHGGGccHHHHHHHHHHHHHccTTTTccHHHHHHHHHHTTTccHHHHHHHHTccHHHHHHHHHHHHHHTTcccEEEEcHHHHHHHH### DISOP:02AL 1-2, 140-155| PSIPRED cccccEEEEEcccHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcc //