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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57137.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  48/68 : Bacteria  866/915 : Eukaryota  183/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:249 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   1->248 1rwbA PDBj 2e-25 37.3 %
:RPS:PDB   5->249 2ae1A PDBj 1e-31 26.6 %
:RPS:SCOP  5->248 1pwxA  c.2.1.2 * 8e-34 18.9 %
:HMM:SCOP  1->248 1zemA1 c.2.1.2 * 3.8e-71 43.6 %
:RPS:PFM   7->175 PF00106 * adh_short 1e-16 42.1 %
:RPS:PFM   175->213 PF05556 * Calsarcin 3e-04 46.2 %
:HMM:PFM   4->176 PF00106 * adh_short 1.2e-37 36.6 164/167  
:BLT:SWISS 7->249 YGFF_ECOLI 9e-68 52.3 %
:PROS 145->173|PS00061|ADH_SHORT
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57137.1 GT:GENE BAD57137.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2466411..2467160) GB:FROM 2466411 GB:TO 2467160 GB:DIRECTION - GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD57137.1 LENGTH 249 SQ:AASEQ MEPGTVVVTGGSRGIGAATARRLARDGFAVHLTYRERADAADRLVREIAGSGGRARATRVDLSVPGDVDALFAAVDADSAPLVGLVNNAGLLETQCRVADLDAARLHRVMAANVVGPMLCAAAAVRRMSTRHGGRGGAIVNVSSVAARLGAPGEYVDYAASKGALDTFTRGLAAEVAGEGIRVNAVRPGYIHTEIHALGGDPDRVERLGPALPMGRGGRPEEVAEAIAWLLSAAASYTTGSFLDLAGGR GT:EXON 1|1-249:0| BL:SWS:NREP 1 BL:SWS:REP 7->249|YGFF_ECOLI|9e-68|52.3|243/247| PROS 145->173|PS00061|ADH_SHORT|PDOC00060| SEG 67->80|dvdalfaavdadsa| SEG 224->236|aeaiawllsaaas| BL:PDB:NREP 1 BL:PDB:REP 1->248|1rwbA|2e-25|37.3|244/261| RP:PDB:NREP 1 RP:PDB:REP 5->249|2ae1A|1e-31|26.6|237/252| RP:PFM:NREP 2 RP:PFM:REP 7->175|PF00106|1e-16|42.1|164/169|adh_short| RP:PFM:REP 175->213|PF05556|3e-04|46.2|39/268|Calsarcin| HM:PFM:NREP 1 HM:PFM:REP 4->176|PF00106|1.2e-37|36.6|164/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 5->248|1pwxA|8e-34|18.9|233/252|c.2.1.2| HM:SCP:REP 1->248|1zemA1|3.8e-71|43.6|243/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 10493 OP:NHOMOORG 1097 OP:PATTERN 111-122433333343-81211-162285449-1---------11142--422-11--1-22423-43 BER2U1-433823-MbXGF-GZ33V*HGHHHOXkolUf*z5WAzJJA84C82LCF93811IFV4KGPRYIB-1111111165Q11121553517221--54D179Q6R6E11111111111111254243322352DBBDD222C8B8CA6443333222563162CFAP4122111121311C9689441E4H99A9AAAC6AAABC9HEGGCHAAA9FGIDD7666665AU555454445555554667686181561511-55447A445767343434243422233322232222233333333333313311133324358A444433443451662575332114812263121214333325411B2AYBBH11111H9oPR348OKPMGCDEDCDCDEDT-IKOKFkGOUlP1mUUIYVZqojgfNZ8FBKERKBIIEAEAAAAAAAAHMND79A81111111111111122-11-121-211116CXoI5EXRJUtbfkhkKKJKJddqqNOON9KyRvPziW38OPIHBFCCOGUEba7974738831221111216JC45E44411212422314763B33647978HQ3222222111111121111111112215597669A85J93687775986545757765A1-1334811-1119A886E6ACCAA999AA-C9AAA99AAAC9B89AA97ELFA33558567778778667677K887776A316666666666661-1525323765727DJC11162512221123179BAA38354I6NMJKFLNVIFGKJGKFL4221132122345B4344377466EFGFJEE89964441132995444--------1-2----------1--------------1121-545552A3 11--54E-421-589MRLIPKTLdbdR885BBBA995I9FCEG887DHLPPXihHMMFFECE416122-2-1422------222343A-HWDRAO77786858BF9-AS2zBL89B1413-24472283CN7-8452424744871423282142534EIIM3IAEA9AEICLBC4564c2126F7NFZGRBBAJ6839 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 249 STR:RPRED 100.0 SQ:SECSTR ccTTEEEEETcccHHHHHHHHHHHTTTcEEEEEEcccHHHHHHHHHHHHHTTccEEEEEccTTcHHHHHHHHHHHHHHTTTcccEEEEcccccccccGGGccHHHHHHHHHHHTHHHHHHHHHHHHHHHTTccEETcEEEEEccGGGTcccTTHcHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEcccccccHHcccHHHHHHHHHHTccccccccHHHHHHHHHHHHcGGGTTccccEEEEcTTG PSIPRED ccccEEEEEccccHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEccccccccccHHHccHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEcccccccccHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHHcHHHccccccEEEccccc //