[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57142.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  7/68 : Bacteria  365/915 : Eukaryota  73/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:235 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->132 1k2wA PDBj 3e-13 38.6 %
:RPS:PDB   8->133 2cnbB PDBj 5e-21 12.0 %
:RPS:SCOP  5->133 1n5dA  c.2.1.2 * 6e-20 27.6 %
:HMM:SCOP  3->223 1zemA1 c.2.1.2 * 4.1e-53 40.4 %
:RPS:PFM   10->133 PF00106 * adh_short 2e-12 42.7 %
:HMM:PFM   10->161 PF00106 * adh_short 4.3e-26 31.1 148/167  
:BLT:SWISS 6->132 DHSO_RHOSH 1e-12 38.6 %
:PROS 130->158|PS00061|ADH_SHORT
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57142.1 GT:GENE BAD57142.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2471565..2472272 GB:FROM 2471565 GB:TO 2472272 GB:DIRECTION + GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD57142.1 LENGTH 235 SQ:AASEQ MEMNAIEGSVALVTGGQRGLGRAFVEELLARGAGKVYATAREPKPSDDPRVVPLPLEVTDPDSVAELAARAGDARIVVNNAGILRPAPLLTADMADVHATFDANVFGPLRVAQAFAPILTANGGGALIDIHSVLSWSAGAAAYGASKAALWSLTNSLRLELAGRGVRVVGVHLGFADTEMVAGFPGPKISPADVAAAVFDGLERGEDEVLVDDVTRQVKAALSGPVAGLSLPLAR GT:EXON 1|1-235:0| BL:SWS:NREP 1 BL:SWS:REP 6->132|DHSO_RHOSH|1e-12|38.6|127/256| PROS 130->158|PS00061|ADH_SHORT|PDOC00060| SEG 134->152|lswsagaaaygaskaalws| SEG 157->174|lrlelagrgvrvvgvhlg| BL:PDB:NREP 1 BL:PDB:REP 6->132|1k2wA|3e-13|38.6|127/256| RP:PDB:NREP 1 RP:PDB:REP 8->133|2cnbB|5e-21|12.0|125/363| RP:PFM:NREP 1 RP:PFM:REP 10->133|PF00106|2e-12|42.7|124/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 10->161|PF00106|4.3e-26|31.1|148/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 5->133|1n5dA|6e-20|27.6|127/288|c.2.1.2| HM:SCP:REP 3->223|1zemA1|4.1e-53|40.4|218/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 860 OP:NHOMOORG 445 OP:PATTERN ------------------------2--22-2---------------1---1-------------1--- 2-2-6--1---1--33111-12--5E11111367774876142442-1-52-221-----2-2-116622-----------11--------1---------2-219-5--------------------1-1-11---2211---2-5-32--2-2------2--2111-1---------------------1---------1------------------------------4--------------------1-1-11---------11-----1211----------1111111111----------------------------1------1---------11------1------------------112-1311------2-111---11112------------2313-515-41-333141513311341111141111-21--------214---1-------------------------------124-1-1---8898973222233443333127371113--11331-21112241-22-2-1-----------2---12-1----1------111-11-1-111143----------------------1---1---1-212-12---11111121111-11111-----2--------1214121111-111111-1111111111111111111111221--1111111111111111311111111-111111111111----------------22111---1-----11-11111-----11-1-1--21-1-1112-2-------------1----------2312121-----------11--------------2-------------------------------------- ------1---------24-53232335-122221-211------222-4755763332211---1111----1-11----2--------1512131-----111---------1-3-1---1-------------------------------1-6-1-----1------3--13-11-----2---1--12--2-1-- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 133 STR:RPRED 56.6 SQ:SECSTR ccGGGcTccEEEEETTTcHHHHHHHHHHHHHccEcEEEEEEccTTcccTTcccccEEEEccTTcHHHHHHHccccEEEEccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHTTccEEEEEEEGGGTccccc###################################################################################################### DISOP:02AL 1-4| PSIPRED cccccccccEEEEEccccHHHHHHHHHHHHccHHHEEEEcccHHHHccccEEEEEEccccHHHHHHHHHHHccccEEEEcccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHccHHHccEEEEccc //