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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57147.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  276/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.4.1a.93.1
:313 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   227->307 2k9sA PDBj 3e-06 28.4 %
:RPS:PDB   207->313 1bl0A PDBj 5e-20 17.8 %
:RPS:SCOP  198->305 1cqeA1  a.93.1.2 * 2e-17 6.7 %
:HMM:SCOP  206->257 1d5yA1 a.4.1.8 * 5.3e-08 28.8 %
:HMM:SCOP  260->307 1d5yA2 a.4.1.8 * 4.2e-11 35.4 %
:RPS:PFM   269->308 PF00165 * HTH_AraC 5e-05 35.0 %
:HMM:PFM   222->258 PF00165 * HTH_AraC 8.9e-08 27.0 37/42  
:HMM:PFM   275->307 PF00165 * HTH_AraC 9.5e-09 37.5 32/42  
:BLT:SWISS 1->307 ARACL_STRLI 2e-23 31.0 %
:PROS 261->303|PS00041|HTH_ARAC_FAMILY_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57147.1 GT:GENE BAD57147.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2474455..2475396) GB:FROM 2474455 GB:TO 2475396 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57147.1 LENGTH 313 SQ:AASEQ MDVLEALLDGPRARGAFLLRSLLDPPWALRIEDGAPLTVAAPLRGEAWLLPDDGDAVRLSTGDVAIVRGPGFYTVADDPATEPSVVVLPGGLCTSAEDGRSLVDEWSLGVRTWGAPEGRTTLLTGTYDNAGEASKPLLAALPALVVLRRDQWRSPLIDVLAEEMQIAAPGQRAVLDRLLDVLLISALRTWFAAQREHAPAWYRAQQDPVVGVALARIHGAPERPWTVATLAAEAGVSRANLAKRFTDLLGEPPMAYLTHWRLAVAADLLTDPEATVTSVARRVGYSTPFAFSTAFKRARGISPQQHRLRGATA GT:EXON 1|1-313:0| BL:SWS:NREP 1 BL:SWS:REP 1->307|ARACL_STRLI|2e-23|31.0|290/304| PROS 261->303|PS00041|HTH_ARAC_FAMILY_1|PDOC00040| SEG 136->147|pllaalpalvvl| SEG 172->187|ravldrlldvllisal| BL:PDB:NREP 1 BL:PDB:REP 227->307|2k9sA|3e-06|28.4|81/107| RP:PDB:NREP 1 RP:PDB:REP 207->313|1bl0A|5e-20|17.8|107/116| RP:PFM:NREP 1 RP:PFM:REP 269->308|PF00165|5e-05|35.0|40/40|HTH_AraC| HM:PFM:NREP 2 HM:PFM:REP 222->258|PF00165|8.9e-08|27.0|37/42|HTH_AraC| HM:PFM:REP 275->307|PF00165|9.5e-09|37.5|32/42|HTH_AraC| GO:PFM:NREP 4 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00165|IPR000005| GO:PFM GO:0005622|"GO:intracellular"|PF00165|IPR000005| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00165|IPR000005| GO:PFM GO:0043565|"GO:sequence-specific DNA binding"|PF00165|IPR000005| RP:SCP:NREP 1 RP:SCP:REP 198->305|1cqeA1|2e-17|6.7|104/510|a.93.1.2| HM:SCP:REP 206->257|1d5yA1|5.3e-08|28.8|52/54|a.4.1.8|1/2|Homeodomain-like| HM:SCP:REP 260->307|1d5yA2|4.2e-11|35.4|48/0|a.4.1.8|1/1|Homeodomain-like| OP:NHOMO 511 OP:NHOMOORG 277 OP:PATTERN -------------------------------------------------------------------- 112-8--1------1-1----3--12------32225132-3-62311--1-1-------211-6-2152------------1----------1------1--1--11----------------------------1111------5--1-------------11---4---------------------------------------------------------------5-------------------------------11--------------1-------------------------------------------------------1-1--------------1-------------------2-11--------3141--------1----------1-11112213-51-344124186521----1-11----112----------1----2--------------------------------3---11-1567685111116644222211D371242--221-1-111-123--51---1111111111----1-------------------------1131-6-----------------------------2---134-21--------1111---11--2--------------2-1-2-1111111111-111111111111111-11-232-1---1-11111111-111111------1---111111-1111--------------12-2----2--1111----1111111-1-2-23331121121211-1----------------------154221131----1111----11---------------------------------------------------1- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 126 STR:RPRED 40.3 SQ:SECSTR ###########################################################################################################################################################################################HHTTTcHHHHHHTTccHHHHHHHHHHHHHHHTTTTcccccHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHTTcccHHHHHHHHHHHHcccHHHHHTccccc DISOP:02AL 191-207, 310-313| PSIPRED ccHHHHHHHHcccccEEEEEEEEccccEEEccccccEEEEEEEEcEEEEEEccccEEEEccccEEEEcccccEEEEccccccccEEEEEccccccccccHHHHHHHHHHHHHcccccccEEEEEEHHHHcHHHHHHHHHHccccEEccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHccc //