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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57150.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  406/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
a.24.16a.4.1c.23.16
:313 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   212->311 1d5yA PDBj 2e-12 37.0 %
:RPS:PDB   12->220 3bhnA PDBj 2e-13 17.0 %
:RPS:PDB   212->313 1bl0A PDBj 5e-24 26.5 %
:RPS:SCOP  98->170 2fexA1  c.23.16.2 * 1e-07 21.1 %
:RPS:SCOP  205->312 1v4aA1  a.24.16.4 * 2e-18 12.0 %
:HMM:SCOP  1->188 1pe0A_ c.23.16.2 * 1.4e-44 42.7 %
:HMM:SCOP  208->259 1d5yA1 a.4.1.8 * 3e-10 42.3 %
:HMM:SCOP  262->313 1d5yA2 a.4.1.8 * 2.3e-13 38.5 %
:RPS:PFM   99->169 PF01965 * DJ-1_PfpI 5e-04 38.8 %
:RPS:PFM   271->309 PF00165 * HTH_AraC 5e-07 51.3 %
:HMM:PFM   219->260 PF00165 * HTH_AraC 3.6e-12 35.7 42/42  
:HMM:PFM   271->310 PF00165 * HTH_AraC 1.7e-13 51.3 39/42  
:HMM:PFM   52->171 PF01965 * DJ-1_PfpI 2e-23 31.1 119/148  
:BLT:SWISS 212->310 RHAS_KLEP7 5e-16 40.4 %
:PROS 263->305|PS00041|HTH_ARAC_FAMILY_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57150.1 GT:GENE BAD57150.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2476772..2477713 GB:FROM 2476772 GB:TO 2477713 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57150.1 LENGTH 313 SQ:AASEQ MHVVAVLALDRVIPFDLSTPLEVFTRTRLPDGRPAYRVRVCAERPQVDAGTFTLRAPWGLDGLDGADTVIVPGVADPASPPSPAVVAALRRAAAAGTRIASICTGTFPLAATGLLDGLRATTHWAAAEALARAHPAVTVDPDVLYVDNDGRVLTSAGAAAGLDLCLHLVRRDYGSAVAADAARLAVMPLEREGGQAQFIVAPLPPAPRGSALEPLLIWLQDNLSRPLTLAEIAAHAGTSTRTLLRQFRDQTGTTPLRWLHRARIHRAQHLLETTDHTVERIAAQVGFGSPTTFRERFTRVTGVTPHAYRRSFR GT:EXON 1|1-313:0| BL:SWS:NREP 1 BL:SWS:REP 212->310|RHAS_KLEP7|5e-16|40.4|99/278| PROS 263->305|PS00041|HTH_ARAC_FAMILY_1|PDOC00040| SEG 71->96|vpgvadpasppspavvaalrraaaag| SEG 118->136|lratthwaaaealarahpa| SEG 176->185|avaadaarla| BL:PDB:NREP 1 BL:PDB:REP 212->311|1d5yA|2e-12|37.0|100/288| RP:PDB:NREP 2 RP:PDB:REP 12->220|3bhnA|2e-13|17.0|200/208| RP:PDB:REP 212->313|1bl0A|5e-24|26.5|102/116| RP:PFM:NREP 2 RP:PFM:REP 99->169|PF01965|5e-04|38.8|67/135|DJ-1_PfpI| RP:PFM:REP 271->309|PF00165|5e-07|51.3|39/40|HTH_AraC| HM:PFM:NREP 3 HM:PFM:REP 219->260|PF00165|3.6e-12|35.7|42/42|HTH_AraC| HM:PFM:REP 271->310|PF00165|1.7e-13|51.3|39/42|HTH_AraC| HM:PFM:REP 52->171|PF01965|2e-23|31.1|119/148|DJ-1_PfpI| GO:PFM:NREP 4 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00165|IPR000005| GO:PFM GO:0005622|"GO:intracellular"|PF00165|IPR000005| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00165|IPR000005| GO:PFM GO:0043565|"GO:sequence-specific DNA binding"|PF00165|IPR000005| RP:SCP:NREP 2 RP:SCP:REP 98->170|2fexA1|1e-07|21.1|71/188|c.23.16.2| RP:SCP:REP 205->312|1v4aA1|2e-18|12.0|108/151|a.24.16.4| HM:SCP:REP 1->188|1pe0A_|1.4e-44|42.7|178/187|c.23.16.2|1/1|Class I glutamine amidotransferase-like| HM:SCP:REP 208->259|1d5yA1|3e-10|42.3|52/54|a.4.1.8|1/2|Homeodomain-like| HM:SCP:REP 262->313|1d5yA2|2.3e-13|38.5|52/0|a.4.1.8|2/2|Homeodomain-like| OP:NHOMO 1694 OP:NHOMOORG 410 OP:PATTERN -------------------------------------------------------------------- 1-1-I--1--1---81222-25--192222216454B797-318373-1---321-----741-7-BECB-1--------1-1-----1132----1----1---B2417--------------------------11------1-6-21--1----------32-1111-------------1--------1---1----2---1-1-62--------214--1-111113O--------------------1-1------1----------111-----------------------------------------------13--1----------2-------3-1---12--32-1--1---1--1---3-47222-----44854---21-3-1111111-116-54334524571-8555838EB77B92-122365144368--------41311--1--------------------------------5--12126ENNMOF89886EEMPBDDD3DNIK6D84--6742-31-4-2273271-11131-------2-1-22-3---1--111--1-2121122--1-2144-----------------------------1221212-42-21111--1311-2113--2------1------55661713553333333-53343333435233333338A7334333523343334433333533433221-455565446666---1----------292411-2-1-----------12--1-222199997ACE8A88C5575-------------1-----131122422122----------------------------------------------------------------1- -------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------3--2-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 313 STR:RPRED 100.0 SQ:SECSTR cccEEEEEcTTEEccTTccHHHHHHHHHHcTTTccccEEEEEEccEEEcTTcEEEccEEGGGGGGccEEEEcccTTHHHHHHTcHHHHHccccTTTcEEEEETTHHHHHHHTTTTTTcEEcccGGGHHHHHHTcEEccGGGcccEEEEEccccEEEccHHHHHHHHHHHHHTTcTTccEEEEEEccHHHHHTTTTcGGGccTTccTTcHHHHHHHHHHHHTTTTcccccHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHTTcccHHHHHHHHHHHHcccHHHHHTccc DISOP:02AL 312-313| PSIPRED ccEEEEEEcccccHHHHHHHHHHHHHHHHccccccEEEEEEEcccEEEEcccEEEccccHHHcccccEEEEcccccccccccHHHHHHHHHHHHcccEEEEHHHHHHHHHHcccccccEEEEcHHHHHHHHHHccccEEEHHHHHHHccccEEHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHcc //