[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57151.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  207/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.6.1
:148 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   17->128 3gp4B PDBj 2e-19 39.3 %
:RPS:PDB   12->124 3d6yA PDBj 2e-19 22.4 %
:RPS:SCOP  15->125 1jbgA  a.6.1.3 * 2e-17 25.7 %
:HMM:SCOP  16->129 1q06A_ a.6.1.3 * 2.6e-28 43.0 %
:HMM:PFM   17->54 PF00376 * MerR 5.3e-14 50.0 38/38  
:HMM:PFM   59->121 PF09278 * MerR-DNA-bind 9.2e-09 28.6 63/65  
:BLT:SWISS 16->132 Y186_HAEIN 5e-24 42.7 %
:PROS 19->41|PS00552|HTH_MERR_1

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57151.1 GT:GENE BAD57151.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2477798..2478244 GB:FROM 2477798 GB:TO 2478244 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57151.1 LENGTH 148 SQ:AASEQ MIAAQADDGERERAKYSIGEAAERSGLSRDTLRWYERIGLMNYIGRDHTGRRRFSDRDLEWLELIGRLRATGMSVADMIRYAELVRAGDATFPQRLEMFRATRAEALAKIAELQQTVAVLDRKIALYEGASATRPAALGTDDCEGTTA GT:EXON 1|1-148:0| BL:SWS:NREP 1 BL:SWS:REP 16->132|Y186_HAEIN|5e-24|42.7|117/135| PROS 19->41|PS00552|HTH_MERR_1|PDOC00477| BL:PDB:NREP 1 BL:PDB:REP 17->128|3gp4B|2e-19|39.3|112/130| RP:PDB:NREP 1 RP:PDB:REP 12->124|3d6yA|2e-19|22.4|107/277| HM:PFM:NREP 2 HM:PFM:REP 17->54|PF00376|5.3e-14|50.0|38/38|MerR| HM:PFM:REP 59->121|PF09278|9.2e-09|28.6|63/65|MerR-DNA-bind| RP:SCP:NREP 1 RP:SCP:REP 15->125|1jbgA|2e-17|25.7|105/106|a.6.1.3| HM:SCP:REP 16->129|1q06A_|2.6e-28|43.0|114/127|a.6.1.3|1/1|Putative DNA-binding domain| OP:NHOMO 311 OP:NHOMOORG 208 OP:PATTERN -------------------------------------------------------------------- ----2-------1-1-----------------111112---11121-1-1-------1--11--1-223111111-----33--------------------------------------------------------------1-------------------------------------------1----1-----21----122-3-11111-1----11-56658345-11111111111111---1---4-22-2-1-44--33332-113541-1-----2211111111111--------------11---1111---46---11-11-11122----1-----1---112-----1--1----1--------------111------1--------------------1----------------1-1--11--1----1-------------21------------------------------------1----111111-11111111111111111------12-------1-11----------1111111----1--------------1-----------------------1-11---1--------------------1-----1111-1--1---1----1--------------1------------------------------------------------------------------------------------------------------1-2-1111--------------1--------------1-----------------------1---2----------------2---------------------1-------------1------------------1 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------6---------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 119 STR:RPRED 80.4 SQ:SECSTR ##########TccccEEHHHHHHHHTccHHHHHHHHHTTcccccEcTTTccEEEcGGGGGHHHHHHHHHHTTccHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH################### DISOP:02AL 1-17, 145-148| PSIPRED cccccccccccccccccHHHHHHHHcccHHHHHHHHHHcccccccccccccEEccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHccccccc //