[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57182.1
DDBJ      :             putative sigma factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  507/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.13
:192 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   21->190 1or7A PDBj 1e-21 35.7 %
:RPS:PDB   14->188 3dxjF PDBj 2e-21 12.0 %
:RPS:SCOP  31->99 1h3lA  a.177.1.1 * 8e-19 37.7 %
:RPS:SCOP  144->184 1iw7F2  a.4.13.2 * 3e-04 19.5 %
:HMM:SCOP  10->122 1or7A2 a.177.1.1 * 8.8e-28 38.4 %
:HMM:SCOP  123->190 1or7A1 a.4.13.2 * 2.3e-12 41.2 %
:RPS:PFM   36->102 PF04542 * Sigma70_r2 4e-11 50.7 %
:RPS:PFM   145->184 PF08281 * Sigma70_r4_2 3e-06 50.0 %
:HMM:PFM   36->102 PF04542 * Sigma70_r2 2e-21 43.3 67/71  
:HMM:PFM   132->184 PF08281 * Sigma70_r4_2 5.4e-16 43.4 53/54  
:BLT:SWISS 21->190 RPOE_SHIFL 1e-21 36.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57182.1 GT:GENE BAD57182.1 GT:PRODUCT putative sigma factor GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2506228..2506806 GB:FROM 2506228 GB:TO 2506806 GB:DIRECTION + GB:PRODUCT putative sigma factor GB:PROTEIN_ID BAD57182.1 LENGTH 192 SQ:AASEQ MTTTDAVVHDTGSTTPDEVTLVERAKDGDVRAYEQLVLRYQNQMFRLALRMLGDRADAEDAVQEVFLGAWRRLSQLQDSAAFVGWLYRMTTNRCLNVIRARRPTADVDPDTAESPRTDTRPDHAAQVNSQLAALNQALQRLTPEQRACWLLREVDGLSYEEIATIVETNTTAVRGRIARARAQLAEVMKPWR GT:EXON 1|1-192:0| BL:SWS:NREP 1 BL:SWS:REP 21->190|RPOE_SHIFL|1e-21|36.7|169/191| SEG 124->141|aaqvnsqlaalnqalqrl| BL:PDB:NREP 1 BL:PDB:REP 21->190|1or7A|1e-21|35.7|168/181| RP:PDB:NREP 1 RP:PDB:REP 14->188|3dxjF|2e-21|12.0|175/349| RP:PFM:NREP 2 RP:PFM:REP 36->102|PF04542|4e-11|50.7|67/70|Sigma70_r2| RP:PFM:REP 145->184|PF08281|3e-06|50.0|40/54|Sigma70_r4_2| HM:PFM:NREP 2 HM:PFM:REP 36->102|PF04542|2e-21|43.3|67/71|Sigma70_r2| HM:PFM:REP 132->184|PF08281|5.4e-16|43.4|53/54|Sigma70_r4_2| GO:PFM:NREP 10 GO:PFM GO:0003677|"GO:DNA binding"|PF04542|IPR007627| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04542|IPR007627| GO:PFM GO:0006352|"GO:transcription initiation"|PF04542|IPR007627| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04542|IPR007627| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04542|IPR007627| GO:PFM GO:0003677|"GO:DNA binding"|PF08281|IPR013249| GO:PFM GO:0003700|"GO:transcription factor activity"|PF08281|IPR013249| GO:PFM GO:0006352|"GO:transcription initiation"|PF08281|IPR013249| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF08281|IPR013249| GO:PFM GO:0016987|"GO:sigma factor activity"|PF08281|IPR013249| RP:SCP:NREP 2 RP:SCP:REP 31->99|1h3lA|8e-19|37.7|69/75|a.177.1.1| RP:SCP:REP 144->184|1iw7F2|3e-04|19.5|41/100|a.4.13.2| HM:SCP:REP 10->122|1or7A2|8.8e-28|38.4|112/113|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 123->190|1or7A1|2.3e-12|41.2|68/68|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 997 OP:NHOMOORG 509 OP:PATTERN -------------------------------------------------------------------- 76J1C11111122131111-121122111112244446223234361-211-332113--41424564455------1--3-2-----5553-5-------2-4361533---------------1-111---121333781115611211121-11-------121121--------------21--11-11111111111-2121111311212211111212------F7-------------------------------------------------------------------------------------------21-1----------3----1--1-4--8--1123414311-2--2-1--C-4---3-------43312132122----------2-11311511-51-3222113-231-1-1121--1-1---1--------------1-------------------------------1211-222213334332111111121111113121111--11111122112331311121111-------111213131--1---2---1-12-1--11-354476-4-------------------------11211315533314333323344442433444---1112------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111--13-----111111111111111111111111----------1333332233222222222----------1111222222222233122221111111--31111111------------------------------------1--1--1---272 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------1------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 177 STR:RPRED 92.2 SQ:SECSTR #############TccHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHGGGccccccHHHHHHHHHHHHHHHHHcccTTccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGGGTccccccccHHHHHcc## DISOP:02AL 7-18| PSIPRED cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccc //