[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57202.1
DDBJ      :             putative proline dehydrogenase
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  348/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
c.1.23
:323 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   141->309 2g37A PDBj 1e-34 44.4 %
:RPS:PDB   29->306 2ekgB PDBj 7e-69 37.2 %
:RPS:SCOP  41->320 1k87A2  c.1.23.2 * 1e-60 27.4 %
:HMM:SCOP  41->315 1k87A2 c.1.23.2 * 1.1e-76 36.0 %
:RPS:PFM   29->315 PF01619 * Pro_dh 8e-29 34.6 %
:HMM:PFM   11->317 PF01619 * Pro_dh 1.6e-67 33.1 305/345  
:BLT:SWISS 31->315 PROD1_BACSU 1e-49 39.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57202.1 GT:GENE BAD57202.1 GT:PRODUCT putative proline dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2519818..2520789) GB:FROM 2519818 GB:TO 2520789 GB:DIRECTION - GB:PRODUCT putative proline dehydrogenase GB:PROTEIN_ID BAD57202.1 LENGTH 323 SQ:AASEQ MSGFTRLLRPALLAAAASPRVERTVTSLRATRALVDRFVAGTTEADALGTVEALLASGRWITVDHLGEHTTDPARARDTVAHYRRLLAALAELPAAGAPGTVRPLEVSVKLSALGQALPGDGAAIALDHAREICTAASAAGIGVTVDAEDHTTTDATLAVVRELRADFPGVGTVLQAYLRRTEGDCREFAGPGSRIRLCKGAYREPASVAFQRAAEVDDSYRRCLRILMSGRGYPMVASHDPAMLAEADRLAAETGRGPDDFEYQMLFGIRDAEQRRLADAGHRMRVYVPYGDQWYGYFMRRLAERPANLAFFLRAAASRDRA GT:EXON 1|1-323:0| BL:SWS:NREP 1 BL:SWS:REP 31->315|PROD1_BACSU|1e-49|39.4|274/302| SEG 6->20|rllrpallaaaaspr| SEG 86->100|llaalaelpaagapg| BL:PDB:NREP 1 BL:PDB:REP 141->309|2g37A|1e-34|44.4|169/292| RP:PDB:NREP 1 RP:PDB:REP 29->306|2ekgB|7e-69|37.2|266/298| RP:PFM:NREP 1 RP:PFM:REP 29->315|PF01619|8e-29|34.6|283/329|Pro_dh| HM:PFM:NREP 1 HM:PFM:REP 11->317|PF01619|1.6e-67|33.1|305/345|Pro_dh| GO:PFM:NREP 4 GO:PFM GO:0004657|"GO:proline dehydrogenase activity"|PF01619|IPR002872| GO:PFM GO:0006537|"GO:glutamate biosynthetic process"|PF01619|IPR002872| GO:PFM GO:0006562|"GO:proline catabolic process"|PF01619|IPR002872| GO:PFM GO:0055114|"GO:oxidation reduction"|PF01619|IPR002872| RP:SCP:NREP 1 RP:SCP:REP 41->320|1k87A2|1e-60|27.4|277/351|c.1.23.2| HM:SCP:REP 41->315|1k87A2|1.1e-76|36.0|272/0|c.1.23.2|1/1|FAD-linked oxidoreductase| OP:NHOMO 376 OP:NHOMOORG 354 OP:PATTERN ------------------------1111--2------------------------------------- 11112---------11111-1---111111111111122211111--1------------11212111111-----------1-------------------------1------------------------------------1111-111-1--------11111111------------11111---1221111111111211222211121211113121------2211111111111111111111--------------------------------------------------------------------------------------------------1---------------------1-------------11-1--1--11------------1111--1-----------------1-11-111-------11111111----1111111-1111-------------------1----1--1---1-------------11-----11-11111-------111-11-1---1----11-111111-1--1-1-1-1111-11111-111-111------1--1------------------------------11-1-112-111111-------11--1----11-------111--1-1111111111-1111111111111111111111--11-1111111111-1111-111----1--111111111111--11111111------11111--------1--1-------1111-1111---------1---111111111-1111-1111-----1111111111------------------------------------------------------------11- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 294 STR:RPRED 91.0 SQ:SECSTR ############################HHcHHHHHHHcccccHHHHHHHHHHHHHTTcEEEEEEcccccccHHHHHHHHHHHHHHHHHHTTcHTTcHcHHHHcccccEEEEEGGGGTTTTcHHHHHHHHHHHHHHHGGGTEEEEEccccGGGHHHHHHHHHHHHHTTccEEEEEETTcTTHHHHHHHHGGGcccEEEEcccccccTTTccccHHHHHHHHHHHHHHHHHHTccEEEEcccHHHHHHHHHHHHHTTccGGGEEEEEETTccHHHHHHHHHTTccEEEEEEEcTTHHHHHHHHHTccHcTTcHHHHTTcTTcc# DISOP:02AL 1-2, 322-323| PSIPRED ccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEcHHcccccccHHHHHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHcccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHcccccccEEEEEEccccHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHccccHHHHHHHHHHHHcc //