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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57216.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  287/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
a.24.16a.4.1c.23.16
:314 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   227->308 1ti9A PDBj 1e-10 34.1 %
:RPS:PDB   35->201 3bhnA PDBj 5e-21 16.0 %
:RPS:PDB   227->313 1bl0A PDBj 5e-16 32.2 %
:RPS:SCOP  25->124 1g2iA  c.23.16.2 * 1e-14 27.0 %
:RPS:SCOP  103->141 1qvvA  c.23.16.2 * 2e-05 7.7 %
:RPS:SCOP  161->311 1v4aA1  a.24.16.4 * 2e-15 12.2 %
:HMM:SCOP  6->195 2ab0A1 c.23.16.2 * 5.6e-55 50.8 %
:HMM:SCOP  207->258 1d5yA1 a.4.1.8 * 1.5e-08 28.8 %
:HMM:SCOP  261->312 1d5yA2 a.4.1.8 * 3.3e-09 36.5 %
:RPS:PFM   103->169 PF01965 * DJ-1_PfpI 4e-06 48.4 %
:HMM:PFM   45->171 PF01965 * DJ-1_PfpI 1.7e-20 36.5 126/148  
:HMM:PFM   227->257 PF00165 * HTH_AraC 1.8e-08 32.3 31/42  
:HMM:PFM   280->308 PF00165 * HTH_AraC 1.1e-08 46.4 28/42  
:BLT:SWISS 25->135 YCP1_STRLI 4e-10 36.0 %
:BLT:SWISS 106->310 GLXA_RHIME 9e-14 28.9 %
:PROS 262->304|PS00041|HTH_ARAC_FAMILY_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57216.1 GT:GENE BAD57216.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2532465..2533409 GB:FROM 2532465 GB:TO 2533409 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57216.1 LENGTH 314 SQ:AASEQ MESTDRDDVVVALADGVLLLDVAGPVQVLHWARRRVRFASLDGGPVRTDVGAPLGADCAFAEVAARIDTLLVPGFAPDDRPDSRLVAAVGALAGRARRVAAVCTGAFVLAEAGLLDGRRATTHWMGCGELARRFPRVAVQPDAIYVRDGGVVTSAGVTAGIDMALALVEEDQGQELARTVAKQLVVFLRRPGGQSQFSVRAQIAGPRADGVRAVVDAVIADPAGDHSLPALAARAAMSERHLSRLFRRELGTTPGRFVERARVEAAQHLLEASTDPIPVVARRCGLGSEETLRRTFVKVLGVTPSDYRARFRAH GT:EXON 1|1-314:0| BL:SWS:NREP 2 BL:SWS:REP 25->135|YCP1_STRLI|4e-10|36.0|111/141| BL:SWS:REP 106->310|GLXA_RHIME|9e-14|28.9|204/324| PROS 262->304|PS00041|HTH_ARAC_FAMILY_1|PDOC00040| SEG 7->24|ddvvvaladgvllldvag| SEG 84->102|rlvaavgalagrarrvaav| SEG 149->160|ggvvtsagvtag| SEG 206->225|pradgvravvdaviadpagd| BL:PDB:NREP 1 BL:PDB:REP 227->308|1ti9A|1e-10|34.1|82/129| RP:PDB:NREP 2 RP:PDB:REP 35->201|3bhnA|5e-21|16.0|162/208| RP:PDB:REP 227->313|1bl0A|5e-16|32.2|87/116| RP:PFM:NREP 1 RP:PFM:REP 103->169|PF01965|4e-06|48.4|64/135|DJ-1_PfpI| HM:PFM:NREP 3 HM:PFM:REP 45->171|PF01965|1.7e-20|36.5|126/148|DJ-1_PfpI| HM:PFM:REP 227->257|PF00165|1.8e-08|32.3|31/42|HTH_AraC| HM:PFM:REP 280->308|PF00165|1.1e-08|46.4|28/42|HTH_AraC| RP:SCP:NREP 3 RP:SCP:REP 25->124|1g2iA|1e-14|27.0|100/166|c.23.16.2| RP:SCP:REP 103->141|1qvvA|2e-05|7.7|39/234|c.23.16.2| RP:SCP:REP 161->311|1v4aA1|2e-15|12.2|147/151|a.24.16.4| HM:SCP:REP 6->195|2ab0A1|5.6e-55|50.8|185/0|c.23.16.2|1/1|Class I glutamine amidotransferase-like| HM:SCP:REP 207->258|1d5yA1|1.5e-08|28.8|52/54|a.4.1.8|1/2|Homeodomain-like| HM:SCP:REP 261->312|1d5yA2|3.3e-09|36.5|52/0|a.4.1.8|2/2|Homeodomain-like| OP:NHOMO 997 OP:NHOMOORG 290 OP:PATTERN -------------------------------------------------------------------- 1---B--1--1---51111-15--1711111143337585-21633------211-----421-4-9DB8--------------------------1----1---922-7------------------------------1---1-2-----------------1-1----------------1-----------------------------------------------12---------------------------------------------------------------------------------------------------------------------111--------------------2--6333-----23444---11-3-1111111-114-543344252A1-55525369745661-133363122237--------31111--1-------------------------------11--11115DIIFHF58775EEKI89993AKGG4943--343-121-3-224417---1121-------2-1-31-2---1--111--2-112---3----1-13-------------------------------11121-11-21111---211-1--1--1------1-------232-22122-1------2111----1-2--11-11-3521122-----------------3--1----1-2--------------1----------2514---1--------------11-1--21-555536BC745461554-------------1111-112-111111-11------------------------------------------------------------------ --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2-----2-1-- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 289 STR:RPRED 92.0 SQ:SECSTR ########################HHHHHHHTTccEEEEEEEcccEEEcTTcEEEccEEGGGGGTGccEEEEccTTHHHHHHTcHHHHHccccTTTcEEEEETTHHHHHHHTTTTTTcEEcccGGGHHHHHHTcEEcEcHHcccEEEETTEEEEccGGGHHHHHHHHHHHHccHHHHHHHHTTTccTTcHHHHHHHHHHHHTccTTcHHHHHHHHHHHHHTHHHHHccHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHTTcccHHHHHHHHHHHHcccHHHHHTcccc# DISOP:02AL 1-5, 8-9, 310-314| PSIPRED cccccccEEEEEEEccccHHHHHHHHHHHHccccEEEEEEcccccEEEcccEEEEcccccccccccccEEEEccccccccccHHHHHHHHHHHHcccEEEEEccHHHHHHHccccccccEEEcHHHHHHHHHHccccccccccEEEEcccEEEcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHcc //