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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57244.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  17/68 : Bacteria  379/915 : Eukaryota  51/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:234 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   54->225 2japC PDBj 3e-16 32.7 %
:RPS:PDB   53->215 1a27A PDBj 2e-20 28.2 %
:RPS:SCOP  53->215 1bdbA  c.2.1.2 * 2e-21 20.9 %
:HMM:SCOP  8->216 1jtvA_ c.2.1.2 * 8.7e-44 35.0 %
:RPS:PFM   54->163 PF00106 * adh_short 2e-07 33.0 %
:HMM:PFM   11->163 PF00106 * adh_short 5.8e-23 31.5 149/167  
:BLT:SWISS 44->192 LVR_LEIAQ 4e-14 32.4 %
:PROS 133->161|PS00061|ADH_SHORT
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57244.1 GT:GENE BAD57244.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2559981..2560685) GB:FROM 2559981 GB:TO 2560685 GB:DIRECTION - GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD57244.1 LENGTH 234 SQ:AASEQ MSRPGARELGNILITGGASGLGAATAAAVRAAGGTPLIIDRDKPDPELAWEYADLADSQDAEEAVARLLTRVDGRLDGVFTAAGTDVCGPLDGVSTADWERVVRVNLFGTAAVVRAALPALRASHGTVVTVASTLGIKAVGDATAYCASKFGVVGFTRALAAETRGEVGVTLLVPGGMHTAFFDGRPEQYAPPPDVTLNQPEDVAQTVLFALTRPPGCEVRELVVCHSTEGSWP GT:EXON 1|1-234:0| BL:SWS:NREP 1 BL:SWS:REP 44->192|LVR_LEIAQ|4e-14|32.4|148/267| PROS 133->161|PS00061|ADH_SHORT|PDOC00060| SEG 15->35|tggasglgaataaavraaggt| SEG 111->123|aavvraalpalra| BL:PDB:NREP 1 BL:PDB:REP 54->225|2japC|3e-16|32.7|171/246| RP:PDB:NREP 1 RP:PDB:REP 53->215|1a27A|2e-20|28.2|163/285| RP:PFM:NREP 1 RP:PFM:REP 54->163|PF00106|2e-07|33.0|109/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 11->163|PF00106|5.8e-23|31.5|149/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 53->215|1bdbA|2e-21|20.9|163/267|c.2.1.2| HM:SCP:REP 8->216|1jtvA_|8.7e-44|35.0|206/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 714 OP:NHOMOORG 447 OP:PATTERN ----1---111111---1------211--11-------------------11------------1--1 111-2--1---11-232----4---A------75661452-122-22--22-322-----122122342-------1-----5--------1-------2-3-121-21----------------221323211-332232-----11141123211---1---122213-------------4111211-21211111121222111211--11121-21321-------21-111111-1111111-----1------1---1111----1---1------------------------------------------------------------1-1-----------11-----1-1-1-1-----3---122112-----1-2-1---2-1-1111-1-11113-34333534-12-4---2117523211--12-13-23--1--------1-------------------------------------114-2211-1211411-111144131111-16242322--11------4-1--1---1----1---------232--2-3------------11111111----12-1-----------------------------111--2-11-------1------1--11------1------11-212-11111-1-11-1111--11-11-1111111111111121111111111111111211----1---22222222222----------------1----1-11-----11-----------2-22121121211112--1----------111111111-1-11------------------111111--------1---------------------------1---------1-- ----1-------11--1--134-312111--------------1----341224121---------------------------------1-1---------1----1-113---3-----------11131-11-----1-1--1-1-----1-1-----------------13-----------------1-111-1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 197 STR:RPRED 84.2 SQ:SECSTR ####################################EEEEccTTHHHHHGGcEEEccTTcHHHHHHHHHTcTTccccEEEEcccccccccGGGccHHHHHHHHHHHTHHHHHHHHHHHHHHHHHcEEEEEEEEGGGTcccTTcHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEccccccTTTTccccHHHHHHHccccHHHHHHHHHHHHHcccccEEcEEEHHHHHHHHH# DISOP:02AL 1-8, 233-234| PSIPRED ccccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHEEEEEcccccHHHHHHHHHHHHHHHcccEEEEEEcccccccccHHHccHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccEEEEccHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccEEccEEEEcccccccc //