[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57250.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  85/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:200 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   9->128 2zb9A PDBj 4e-17 38.8 %
:RPS:PDB   15->195 3br5D PDBj 3e-14 9.9 %
:RPS:SCOP  9->65 2o7tA1  a.4.1.9 * 5e-13 28.1 %
:RPS:SCOP  83->197 2fq4A2  a.121.1.1 * 1e-04 17.5 %
:HMM:SCOP  8->75 2id3A1 a.4.1.9 * 5.4e-15 45.6 %
:HMM:SCOP  80->198 2id3A2 a.121.1.1 * 1.2e-25 38.1 %
:RPS:PFM   18->61 PF00440 * TetR_N 2e-05 52.3 %
:HMM:PFM   18->62 PF00440 * TetR_N 1.3e-17 51.1 45/47  
:BLT:SWISS 10->133 YDES_BACSU 2e-13 36.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57250.1 GT:GENE BAD57250.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2566979..2567581) GB:FROM 2566979 GB:TO 2567581 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57250.1 LENGTH 200 SQ:AASEQ MVKQPDPTRRSERSRQAILTAARELVAETGYAKLSIEAIAARAGVGKQTIYRWWPSKGAVVLDAVLALSRSGPEQSMALPDTGDLAADLRTVMRATVAEFADPAFEKPIRALNREIIDDPDLAARYRETLADPVDEAKKARLRSAQRAGQLAADADLDLALELLYAPLYQRWLLRTGPLTPDYADALVDAFLKAMRPDAG GT:EXON 1|1-200:0| BL:SWS:NREP 1 BL:SWS:REP 10->133|YDES_BACSU|2e-13|36.1|119/198| SEG 145->170|aqragqlaadadldlalellyaplyq| BL:PDB:NREP 1 BL:PDB:REP 9->128|2zb9A|4e-17|38.8|116/188| RP:PDB:NREP 1 RP:PDB:REP 15->195|3br5D|3e-14|9.9|181/183| RP:PFM:NREP 1 RP:PFM:REP 18->61|PF00440|2e-05|52.3|44/47|TetR_N| HM:PFM:NREP 1 HM:PFM:REP 18->62|PF00440|1.3e-17|51.1|45/47|TetR_N| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| RP:SCP:NREP 2 RP:SCP:REP 9->65|2o7tA1|5e-13|28.1|57/78|a.4.1.9| RP:SCP:REP 83->197|2fq4A2|1e-04|17.5|114/115|a.121.1.1| HM:SCP:REP 8->75|2id3A1|5.4e-15|45.6|68/0|a.4.1.9|1/1|Homeodomain-like| HM:SCP:REP 80->198|2id3A2|1.2e-25|38.1|118/0|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain| OP:NHOMO 159 OP:NHOMOORG 85 OP:PATTERN -------------------------------------------------------------------- --114---------633----5--35-----246662511-33411-1-111-----3---11-5-3364--------------------------------------------------------------------------1-1-11-1--------------2--1-----------------------1111111--------------1-----------------2----------------------------------------1-1--------------------------------------------------1111111-1-1---11---------------------------------------------------1---------------------11-11--------------1-11-----------------------------------------------------------1----------------------------------------------------------1-----------------------11-------------111111-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2-----------------------------------------------------11----------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 200 STR:RPRED 100.0 SQ:SECSTR HHHTcccccccTTHcHHHHHHHHHHHHHHccTTccHHHHHHHHTccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHTTGGGcccHHHHHHHHHHHHHHccccTTTHHHHHHHHHHHTccHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccT DISOP:02AL 1-17, 199-200| PSIPRED cccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccc //