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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57251.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  43/68 : Bacteria  804/915 : Eukaryota  188/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:271 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->182 1k2wA PDBj 4e-21 32.4 %
:RPS:PDB   3->271 1a27A PDBj 8e-35 28.0 %
:RPS:SCOP  3->271 1a27A  c.2.1.2 * 2e-34 28.0 %
:HMM:SCOP  1->230 1zemA1 c.2.1.2 * 1.5e-56 35.7 %
:RPS:PFM   3->166 PF00106 * adh_short 2e-22 45.1 %
:HMM:PFM   6->165 PF00106 * adh_short 5.9e-30 30.1 156/167  
:BLT:SWISS 7->270 YQ53_SCHPO 3e-28 32.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57251.1 GT:GENE BAD57251.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2567691..2568506 GB:FROM 2567691 GB:TO 2568506 GB:DIRECTION + GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD57251.1 LENGTH 271 SQ:AASEQ MSRIWFITGASRGLGRAFTEAALRAGDRVVGAARDVAPLADLAAEYPDRLVPLALDVTDRAAVFAAVERTVARVGRLDIVVNNAGAMLLGMVEEATEEQIRAHFDVNLFGALWVTQAVLPHLRNQGGGRLLQITTMGTGGGFPMVGLYAAGKSALDSVSEAVAMEAEQFGVQVTIVQMGGYDTGLFTLGTTATTPDPRYQRLRDELTEMWGDDAGPAPETAAPVLLRLVDLPNPPRRLIVGSDSFDLVQQNLRDRAAGYREWEHLSRAVAG GT:EXON 1|1-271:0| BL:SWS:NREP 1 BL:SWS:REP 7->270|YQ53_SCHPO|3e-28|32.0|259/292| SEG 183->194|tglftlgttatt| BL:PDB:NREP 1 BL:PDB:REP 7->182|1k2wA|4e-21|32.4|176/256| RP:PDB:NREP 1 RP:PDB:REP 3->271|1a27A|8e-35|28.0|264/285| RP:PFM:NREP 1 RP:PFM:REP 3->166|PF00106|2e-22|45.1|164/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 6->165|PF00106|5.9e-30|30.1|156/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 3->271|1a27A|2e-34|28.0|264/285|c.2.1.2| HM:SCP:REP 1->230|1zemA1|1.5e-56|35.7|230/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 10146 OP:NHOMOORG 1035 OP:PATTERN --1--243222222211411121-A44646471----------1--23--612-11----11313-35 BCM2X2-4555664WugKL-Kh44W*KJKKJUj***Un*s2UAkFA752A5-D8752511CAJ2GBNSTC51111---2233M--1--2342-311---85N47Bw6R8B1---1---------15559A774866BAABD---D7J8AB76766222224443638HCV6-12111131211EA56654-D7DAA9AA8BBBBDA9ABEACC8BAB799A8DD65555558S533222212233322666566-6-55-5---9B4454633277978434555534434444444444464466666666643333133344-459555444434431551142321--57121321111222211-4312A2CS99C111-1L7XFI356G9DFD99A989A9ABH-ILFKFOIJJWI1mMMBeUSiicWRII9H4FBIEDEH9BD777777779EI945A6---1-111------11---------1-1-3CbZA5CIGCOedgdgWFEEEDPPdZGGGG6DsMrFiUK24IJED999A9CM9QH5A61655641111111347EB46B5B11-11-1221168727-1616878KQ15211111111211211111113-113119776BB66C651555726852346556546--23423------ABEK5G77997787888-9779A679A997999799AGJJA5557976999897897779AN76666683-4A9AAAA9AAA911151311253532B9CE222424211113122DDEFE5D5A8F5HKFEBDGJKCEFFFHBG4232232221444B66666775795A899983333131--31774466--------1-3----2---1-1--------------3421133333391 ----XM7---2-24CIIKCSMNKOONT7846787D76B8A88A565HDQfLSlcHKLFCCBB66786546648275535566676A46-UoGI7b92223226788-AC2*XaNISE9594DJ6SM3L8T*K-LKM9DC7G9DNH57869I24D9ILMZVdOAUOGAHFHP9GYK7661W4222DB88IAH666JGKJ7 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 271 STR:RPRED 100.0 SQ:SECSTR ccEEEEEcccccHHHHHHHHHHHTcTTccEEEEEEEccGGGTHHHcTTcEEEEEccTTcHHHHHHHHHTcTTcHccccEEEEcccccccccGGGccHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTcEEEEEEEEGGGTcccTTcHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEccccccccTTTTccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEcccTTHHHHHTTTccTTTcHHHHHHHHHHHHc DISOP:02AL 270-271| PSIPRED ccEEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHHHHccEEEEEEccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccEEEcHHHHHHHHHHHHHHHHcHHHHHHHcccccc //