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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57262.1
DDBJ      :             putative dehydrogenase
Swiss-Prot:             

Homologs  Archaea  6/68 : Bacteria  324/915 : Eukaryota  17/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:342 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   14->172 1udcA PDBj 2e-15 30.2 %
:RPS:PDB   14->336 3c1oA PDBj 2e-18 16.0 %
:RPS:SCOP  3->43 2bkaA1  c.2.1.2 * 5e-05 15.0 %
:RPS:SCOP  16->197 1sb8A  c.2.1.2 * 6e-22 21.5 %
:HMM:SCOP  13->337 1eq2A_ c.2.1.2 * 2.1e-50 25.8 %
:RPS:PFM   16->187 PF01073 * 3Beta_HSD 2e-14 35.5 %
:HMM:PFM   14->244 PF01370 * Epimerase 4.7e-29 26.1 222/238  
:HMM:PFM   265->309 PF11786 * Aft1_HRA 0.00038 33.3 45/79  
:BLT:SWISS 14->172 GALE_SALTY 2e-15 30.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57262.1 GT:GENE BAD57262.1 GT:PRODUCT putative dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2578367..2579395 GB:FROM 2578367 GB:TO 2579395 GB:DIRECTION + GB:PRODUCT putative dehydrogenase GB:PROTEIN_ID BAD57262.1 LENGTH 342 SQ:AASEQ MRRAPTDGMGAVLIAVTGGTGYLGAHTVAALLADGHEVRLLVHPAENPTEVTALFGVGADRLTTVAGDIRDRAVVATLLDGCDALLHAAGVVGTDSRREALMWEVNVEATGRILAEATARGLDPIVHVASYSALFPCPDPVITPDSPTAAGRSAYGRTKSTADRIARALQAAGAPLVITYPSSVVGPALGPQAGITAEGWAVMLRSGWAPSVRGGMQMVDVRDVAAVHAALMRPGRGPRRYLCGGHLLTFDEIVDLLEEASGRRIRRVPLSPALFRGIGRATDLLSRVMPISAGLSYEAAWLLTAATPTDDSRTLAELGVRWRPIRASIVDALRATETAADA GT:EXON 1|1-342:0| BL:SWS:NREP 1 BL:SWS:REP 14->172|GALE_SALTY|2e-15|30.8|159/338| SEG 219->230|vdvrdvaavhaa| BL:PDB:NREP 1 BL:PDB:REP 14->172|1udcA|2e-15|30.2|159/338| RP:PDB:NREP 1 RP:PDB:REP 14->336|3c1oA|2e-18|16.0|294/314| RP:PFM:NREP 1 RP:PFM:REP 16->187|PF01073|2e-14|35.5|166/261|3Beta_HSD| HM:PFM:NREP 2 HM:PFM:REP 14->244|PF01370|4.7e-29|26.1|222/238|Epimerase| HM:PFM:REP 265->309|PF11786|0.00038|33.3|45/79|Aft1_HRA| GO:PFM:NREP 2 GO:PFM GO:0003854|"GO:3-beta-hydroxy-delta5-steroid dehydrogenase activity"|PF01073|IPR002225| GO:PFM GO:0006694|"GO:steroid biosynthetic process"|PF01073|IPR002225| RP:SCP:NREP 2 RP:SCP:REP 3->43|2bkaA1|5e-05|15.0|40/231|c.2.1.2| RP:SCP:REP 16->197|1sb8A|6e-22|21.5|181/341|c.2.1.2| HM:SCP:REP 13->337|1eq2A_|2.1e-50|25.8|291/307|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 487 OP:NHOMOORG 347 OP:PATTERN ----------------1-------111--2----------------1--------------------- 112-1--1------4-122-23--4122222332222-33--11---1----11------21--3--41-1-----------1--1--1111-----------1111-1----------------141423333221221122-21112211-----2-1121--142211-1-----1--11112-----1---------------------------1---1-------21--------------------------------------------------111-11------------------------1-------------------------------------2-------------1----1----1---------11522-2-1--1111111111111-1214261212--------11-----1-1---1--111--11111111212125----------------------------------1-1-11-11221211111111121111-21111211-----1--1--1--11--1----1---11111112--124-1------11---2232224-121321321------------------------1---2------1--------------1-----1---2-11------11112111111111111-1111111111111--11-111111---1-11111111111111111111111--------------------------1111----------------1-12-1----1-1----11-11-1-1-1--------------------------2-----1------------1111------------------------------------1---1-1------ --1--------------------------------------------------------------------------------------------------------12-1--------------------------------------------1---11--1------------21-----1-1422-41------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 336 STR:RPRED 98.2 SQ:SECSTR cccccccccccccEEEETTTcTTHHHHHHHHHHTTccEEEEEcTTccHHHHHHHHHHHHTTcEEEEccTTcHHHHHHHHTTccEEEEcccGGGTTTccHHHHHHHcGGGHHHHHHHHHHccccEEEcccccccGGGccccccccTTcccccccHHHHHHHHHHHHHHHHHHHTcccEEEEccEEHHHHHHHcccccccTTccEEEETTcccEEEEEcHHHHHHHHHHHHHcGGGTTEEEEcccGGGEEEHHHHHHHHHHHHTccccEEEEcHHHHHHHHHHccTTTHHcHHHHHHHHHTTcTTTcccccccEEGGGTcTTTTccccccHHHHHHHH###### DISOP:02AL 1-10, 341-342| PSIPRED ccccccccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEEEccccHHHHHHHHHcccccEEEEEEEcccHHHHHHHHHHccEEEEEcEEcccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEccccEEcccccccccHHHHHHHHHHcccccEEEcccccEEEHHHHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHHHcccccEEEccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHccccccHHHHHHHcccccccHHHHHHHHHHHHHHHccc //