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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57265.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  55/68 : Bacteria  871/915 : Eukaryota  192/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:256 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   9->236 2a4kA PDBj 2e-29 45.7 %
:RPS:PDB   9->239 1a27A PDBj 2e-31 22.9 %
:RPS:SCOP  9->243 1pwxA  c.2.1.2 * 3e-37 22.2 %
:HMM:SCOP  1->236 1zemA1 c.2.1.2 * 2.7e-69 44.0 %
:RPS:PFM   10->152 PF00106 * adh_short 1e-05 35.0 %
:HMM:PFM   8->163 PF00106 * adh_short 4.1e-26 32.5 154/167  
:BLT:SWISS 6->236 BACC_BACSU 5e-31 36.4 %
:PROS 132->160|PS00061|ADH_SHORT
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57265.1 GT:GENE BAD57265.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2581555..2582325) GB:FROM 2581555 GB:TO 2582325 GB:DIRECTION - GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD57265.1 LENGTH 256 SQ:AASEQ MSDRHTPGTALVIGGASGIGLATARAFTAEGYRVVAADIDEDAARTAAAELGATALGMDVTDEHSVATGIAGIESPTAVVDCAGLSMPGPITELELAHWQTTVDVCLTGSFLVIKHAGRHIAEGGSITCIASLNGRQPGTGMAAYCAAKAGVLMLVQVAALELAPRGVRVNAISPGLVDTPLVAGVALVPGLREEYLENTPLGRSGAPEEVAELAVFLASAKARWMTGAAIDLNGGAHLRRYPDILARVAAMTDGG GT:EXON 1|1-256:0| BL:SWS:NREP 1 BL:SWS:REP 6->236|BACC_BACSU|5e-31|36.4|231/253| PROS 132->160|PS00061|ADH_SHORT|PDOC00060| SEG 36->57|aadidedaartaaaelgatalg| BL:PDB:NREP 1 BL:PDB:REP 9->236|2a4kA|2e-29|45.7|221/237| RP:PDB:NREP 1 RP:PDB:REP 9->239|1a27A|2e-31|22.9|231/285| RP:PFM:NREP 1 RP:PFM:REP 10->152|PF00106|1e-05|35.0|143/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 8->163|PF00106|4.1e-26|32.5|154/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 9->243|1pwxA|3e-37|22.2|234/252|c.2.1.2| HM:SCP:REP 1->236|1zemA1|2.7e-69|44.0|234/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 12596 OP:NHOMOORG 1118 OP:PATTERN 222-23469797877518154111755A385722---------21131--321-22112132743122 EEP6i2-555C361UtjLL-Lk22Z*LKLLLOsy**fu**5g9*OME63B82MII84911LIS4JGbVaSF-111--11194W11222665527111--63J39De6P5C11111111111111232132112342CDDKJ222E8679A4355522211523252D96K3121121111111CA7AB441H7KEEFEFHEHDFGFHIFLFKKFKFFGAHILMFB666655IT7666665456666658BBAA71A16714-1-464466546888545656465633233333333333455554565555522211122284357C5554444547856624645321177212A6113224333335512C19bIIP12222H8zXZ67AQOUPJFGHGEFHFHHR-IMRKIjGPQqV1oeeKYUfrtolkTaBKBMITOGNQHFK88888888NROB6AA9111111111112223312212221211117Fr*K4JhZRZxioqrqNRQROddsoUTTTCQ*U*QylZ46STLKAGEDSFWFff6A93636D41221211246IG84D463121124223145539435387DBIO332332222222223222221221321779A86CDB6H82798897ABA885A6786791-2456811-111BEEB5H6CCCBCAAACC-CCDCB9BCBCCACABCCBAINKE6579A78999A9AA889899OAA9998A21AAAAAAA9AAAA111433233AA9A3AHKE111626111111352CDGGD4C478J9OPONHOMaEFFJHFKJJ5454434443345D545548A79AJJJGKFDBCE65551142887666--------1-3--------1-1------1-------32421445553A4 111144D-732-29AYhSScPWQqdnWGG7CDDFFD7KDHCHIBCCMJRWTeyuLQJFCDCC77913425-1976111113865B7-A-IZFhEWCCBB8A7BCEC-8M8*AHCCA65131294A73A3EdA-97B32538669526244B22A4767JDDE5UHCE96B8AIFA4793Z2228HCRFhSPC89L6979 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 253 STR:RPRED 98.8 SQ:SECSTR ccccccGGEEEEcccccHHHHHHHHHHHTcTTccEEEEEEEccGGGTHHHHHHHHHTccTTcHHHHHHHHHTcTTccccEEEccccccccGGGccHHHHHHHHHHHTHHHHHHHHHHHHHHHHcEEEEEEEEGGGTcccTTcHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEccccccTTTTccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccEEEcccTTHHHHHTTTcHHHHHHTTccccE### DISOP:02AL 1-2, 253-256| PSIPRED ccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHccEEEEEEccccHHHHHHHHHHHccccEEEEcccccccccHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHcccEEEEEHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccEEEEEEccHHHcccccHHHHHHHHHccc //