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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57278.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  18/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:236 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   28->66 2vkvA PDBj 3e-04 43.6 %
:RPS:PDB   27->193 3bt9B PDBj 4e-08 9.0 %
:RPS:SCOP  27->58 1jt0A1  a.4.1.9 * 7e-07 28.1 %
:RPS:SCOP  88->234 1zk8A2  a.121.1.1 * 5e-06 15.2 %
:HMM:SCOP  1->74 1rktA1 a.4.1.9 * 9.3e-11 32.4 %
:HMM:SCOP  83->235 1zk8A2 a.121.1.1 * 6.7e-09 25.7 %
:HMM:PFM   16->62 PF00440 * TetR_N 2.9e-16 48.9 47/47  
:BLT:SWISS 28->62 TETR3_ECOLX 5e-04 48.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57278.1 GT:GENE BAD57278.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2596577..2597287) GB:FROM 2596577 GB:TO 2597287 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57278.1 LENGTH 236 SQ:AASEQ MTGRRGRVPAVAAADIRRAARALLVAQGPEAMTLRAIARDLGVTAPALYRHYASHEELADALRADICLDLADELAVEAAAATEDGLLQLIAICRGFRRWALAHAHEFTLVFASPNRVHTAGLRRFEEPFGRVFLAAAGRLLTTYELALPPTDTIPPGLRADLIGYQNDLLAMLAEAGQKFPAEKLDLGVTYLMITLWARLYGHVTLEVFGNYPLPVRDPEALFDTVLAELARGIGV GT:EXON 1|1-236:0| BL:SWS:NREP 1 BL:SWS:REP 28->62|TETR3_ECOLX|5e-04|48.6|35/100| SEG 3->26|grrgrvpavaaadirraarallva| SEG 68->84|ldladelaveaaaated| BL:PDB:NREP 1 BL:PDB:REP 28->66|2vkvA|3e-04|43.6|39/200| RP:PDB:NREP 1 RP:PDB:REP 27->193|3bt9B|4e-08|9.0|166/186| HM:PFM:NREP 1 HM:PFM:REP 16->62|PF00440|2.9e-16|48.9|47/47|TetR_N| RP:SCP:NREP 2 RP:SCP:REP 27->58|1jt0A1|7e-07|28.1|32/71|a.4.1.9| RP:SCP:REP 88->234|1zk8A2|5e-06|15.2|99/105|a.121.1.1| HM:SCP:REP 1->74|1rktA1|9.3e-11|32.4|74/0|a.4.1.9|1/1|Homeodomain-like| HM:SCP:REP 83->235|1zk8A2|6.7e-09|25.7|105/0|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain| OP:NHOMO 24 OP:NHOMOORG 18 OP:PATTERN -------------------------------------------------------------------- ----1---------------------------11112----2-2-------------1------2311--1---------------------------------------------------------11----------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 174 STR:RPRED 73.7 SQ:SECSTR ##########################cccccccHHHHHHHHTccTTcTTcccccHHHHHHHHHHHHHHHHHHHHHHHHGGGcccHHHHHHHHHHHHHHccccGGGHHHHHHHHTcccccccTTTTHHHHHHHHHHHHHHHHHHHHHHTccccccHHHHHHHHHHHHHHHHHTTTTccHHHHHHHHHHHHHHHHHHHHHTG#################################### DISOP:02AL 1-13| PSIPRED ccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccc //