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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57284.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  46/915 : Eukaryota  2/199 : Viruses  1/175   --->[See Alignment]
:246 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   58->111 PF08310 * LGFP 2e-05 52.7 %
:RPS:PFM   112->164 PF08310 * LGFP 1e-10 64.2 %
:RPS:PFM   166->217 PF08310 * LGFP 5e-09 60.4 %
:HMM:PFM   58->110 PF08310 * LGFP 1.2e-22 55.8 52/54  
:HMM:PFM   112->165 PF08310 * LGFP 2e-26 61.1 54/54  
:HMM:PFM   166->218 PF08310 * LGFP 7.3e-25 58.5 53/54  
:HMM:PFM   220->246 PF08310 * LGFP 6.5e-08 51.9 27/54  
:HMM:PFM   10->45 PF08415 * NRPS 6.5e-05 44.4 36/58  
:BLT:SWISS 37->242 CSP1_CORGL 7e-30 39.8 %
:REPEAT 4|36->81|82->135|136->188|189->240
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57284.1 GT:GENE BAD57284.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2601914..2602654) GB:FROM 2601914 GB:TO 2602654 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD57284.1 LENGTH 246 SQ:AASEQ MAQRPGSRAARRTAAATASLAVLFTSALGVAGARPVGAFDVGGAIEVEYDQAGGPAVLGDPTGPELDAASGGRFQTFANNAAIYWRGDVGAHQVGGPIRDKWGQLGYERGALGYPVTRETATPGDTGRFNHFQGGSIYWSVGTAAHQVGGAIRDKWGQLGWESGPLGFPVTDESTSADNGRYNLFNGGAIYYSPRTGAHAVWGVIRDRWIAAGAENGQYGYPTSDEYDYEDGKAQDFEGGRITWTP GT:EXON 1|1-246:0| BL:SWS:NREP 1 BL:SWS:REP 37->242|CSP1_CORGL|7e-30|39.8|201/657| NREPEAT 1 REPEAT 4|36->81|82->135|136->188|189->240| SEG 7->28|sraarrtaaataslavlftsal| RP:PFM:NREP 3 RP:PFM:REP 58->111|PF08310|2e-05|52.7|53/54|LGFP| RP:PFM:REP 112->164|PF08310|1e-10|64.2|53/54|LGFP| RP:PFM:REP 166->217|PF08310|5e-09|60.4|52/54|LGFP| HM:PFM:NREP 5 HM:PFM:REP 58->110|PF08310|1.2e-22|55.8|52/54|LGFP| HM:PFM:REP 112->165|PF08310|2e-26|61.1|54/54|LGFP| HM:PFM:REP 166->218|PF08310|7.3e-25|58.5|53/54|LGFP| HM:PFM:REP 220->246|PF08310|6.5e-08|51.9|27/54|LGFP| HM:PFM:REP 10->45|PF08415|6.5e-05|44.4|36/58|NRPS| OP:NHOMO 115 OP:NHOMOORG 50 OP:PATTERN --------------------------------------------------1----------------- --1--23176311212322-22112222222222325246-111A--------3-4----1----12------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------------------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ----------------------------------------------11------------------------------------------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------1---------------------------------------------------------------------------------------------- DISOP:02AL 1-16| PSIPRED ccccccccHHcccHHHHHHHHHHHHHHHHcccccccccEEHHHHHHHHHHHcccccccccccccccccccccEEEEEEcccEEEEccccccEEEcHHHHHHHHHHccccccccccccccEEcccccccEEEEEcEEEEEcccccEEEEEHHHHHHHHHHccccccccccccccEEcccccEEEEEcccEEEEccccccEEEEEHHHHHHHHcccccccccccccccEEccccEEEEEEcEEEEEcc //