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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57288.1
DDBJ      :             putative oxidoreductase
Swiss-Prot:             

Homologs  Archaea  48/68 : Bacteria  484/915 : Eukaryota  132/199 : Viruses  0/175   --->[See Alignment]
a.118.1a.7.3c.3.1d.168.1
:893 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   36->556 1jnrA PDBj 4e-28 30.2 %
:RPS:PDB   37->557 2b76M PDBj 7e-43 19.1 %
:RPS:PDB   616->708 2bkuB PDBj 7e-09 10.9 %
:RPS:SCOP  14->280 1e7pA2  c.3.1.4 * 7e-19 24.5 %
:RPS:SCOP  256->389 1d4cA3  d.168.1.1 * 6e-13 15.3 %
:RPS:SCOP  363->410 1d7yA1  c.3.1.5 * 1e-05 27.1 %
:RPS:SCOP  438->563 1kf6A1  a.7.3.1 * 3e-26 16.7 %
:RPS:SCOP  616->789 1lrvA  a.118.1.5 * 3e-10 30.8 %
:HMM:SCOP  1->444 1jnrA2 c.3.1.4 * 1.8e-64 32.3 %
:HMM:SCOP  437->565 2bs2A1 a.7.3.1 * 1.1e-34 33.1 %
:HMM:SCOP  618->893 1b3uA_ a.118.1.2 * 2.2e-24 30.8 %
:RPS:PFM   15->384 PF00890 * FAD_binding_2 4e-20 33.9 %
:RPS:PFM   448->556 PF02910 * Succ_DH_flav_C 2e-08 30.8 %
:HMM:PFM   15->386 PF00890 * FAD_binding_2 5e-41 30.2 364/421  
:HMM:PFM   656->683 PF02985 * HEAT 6.7e-06 50.0 28/31  
:HMM:PFM   837->861 PF02985 * HEAT 6.8e-06 44.0 25/31  
:HMM:PFM   448->560 PF02910 * Succ_DH_flav_C 1.1e-13 23.4 111/129  
:HMM:PFM   623->647 PF12460 * MMS19_N 0.00026 44.0 25/65  
:BLT:SWISS 15->549 DHSA_SCHPO 3e-23 28.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57288.1 GT:GENE BAD57288.1 GT:PRODUCT putative oxidoreductase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2603863..2606544) GB:FROM 2603863 GB:TO 2606544 GB:DIRECTION - GB:PRODUCT putative oxidoreductase GB:PROTEIN_ID BAD57288.1 LENGTH 893 SQ:AASEQ MKIPELTDRLRFDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHVRHSGALAMGMDGVNNAVIPGKASPEDYVAEITRANDGIVDQRTIYQTATRGFAMVQRLERYGVKFEKDEYGEYAVRRVHRSGSYVLPMPEGKDVKKALYRVLRKRENRERIRIENRLMPVRVLTAGGRAVGAAALHTRTGEFVAVAAKAVILATGPCGRLGLPASGYLYGTYENPTNAGDGYAMAYHAGAELSGIECFQINPLIKDYNGPACAYVANPFGGYQVNAAGERFVDSDYWSGQMMAEVKREIESAKGPIYLKVSHLPEETIGTLESILHTTERPTRGTFHANRGHDYRTHDIEMHISEIGLCSGHSASGVWVDEHARTTVPGLYAAGDLACVPHNYMIGAFVFGDLAGAHAAGTLAEVPAPGELPEDQLAAAHELIYRPLRQPDGPPQPQVEYKLRRFVNDYVAPPKTATKLALAVETFERMRAEVAGIGARTPHELMRAAEVSFIRDCAEMAARSSLTRTESRWGLYHERADLPARDDGAWRYHLNLRKNAAGEMEFHKRPVAPYLVPVPGLDDIPSVGPDLPVEQPRVRVGRAPDRDATPAAPRTDAPAAPPSPRIVTLLALDSPTVEDLSPYLADTDAGVRAAALSVLTEHTPDGFAEPLVRALDDPAAAVRRTAAESLRELVEVLPAATGLAERLDSPDPLVRATVLDLVRARRAGTAAQFTAALADPDHRVRIEAVRGLVALDDVEGVSAAATDGNREVRVAVANGLAAIGAGGHPVIRALTGDRDPLVRAAALAAYAALGAAEPDRAELAAALGDSAWQVRVGAAKGLAGAPADAAVPLLVEALRDPHLDVRKAAVLSLARWPEHPGAHDGLTGATTDSDADVRAYARRAVTA GT:EXON 1|1-893:0| BL:SWS:NREP 1 BL:SWS:REP 15->549|DHSA_SCHPO|3e-23|28.5|498/641| SEG 20->33|gggtagtmaaltaa| SEG 152->163|renreririenr| SEG 588->611|rapdrdatpaaprtdapaappspr| SEG 709->724|rarragtaaqftaala| SEG 790->813|aaalaayaalgaaepdraelaaal| SEG 822->844|vgaakglagapadaavpllveal| SEG 878->892|dsdadvrayarravt| BL:PDB:NREP 1 BL:PDB:REP 36->556|1jnrA|4e-28|30.2|514/642| RP:PDB:NREP 2 RP:PDB:REP 37->557|2b76M|7e-43|19.1|512/572| RP:PDB:REP 616->708|2bkuB|7e-09|10.9|92/857| RP:PFM:NREP 2 RP:PFM:REP 15->384|PF00890|4e-20|33.9|342/375|FAD_binding_2| RP:PFM:REP 448->556|PF02910|2e-08|30.8|107/114|Succ_DH_flav_C| HM:PFM:NREP 5 HM:PFM:REP 15->386|PF00890|5e-41|30.2|364/421|FAD_binding_2| HM:PFM:REP 656->683|PF02985|6.7e-06|50.0|28/31|HEAT| HM:PFM:REP 837->861|PF02985|6.8e-06|44.0|25/31|HEAT| HM:PFM:REP 448->560|PF02910|1.1e-13|23.4|111/129|Succ_DH_flav_C| HM:PFM:REP 623->647|PF12460|0.00026|44.0|25/65|MMS19_N| GO:PFM:NREP 4 GO:PFM GO:0009055|"GO:electron carrier activity"|PF00890|IPR003953| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00890|IPR003953| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF02910|IPR004112| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02910|IPR004112| RP:SCP:NREP 5 RP:SCP:REP 14->280|1e7pA2|7e-19|24.5|249/336|c.3.1.4| RP:SCP:REP 256->389|1d4cA3|6e-13|15.3|124/146|d.168.1.1| RP:SCP:REP 363->410|1d7yA1|1e-05|27.1|48/183|c.3.1.5| RP:SCP:REP 438->563|1kf6A1|3e-26|16.7|126/134|a.7.3.1| RP:SCP:REP 616->789|1lrvA|3e-10|30.8|143/233|a.118.1.5| HM:SCP:REP 1->444|1jnrA2|1.8e-64|32.3|331/357|c.3.1.4|1/1|FAD/NAD(P)-binding domain| HM:SCP:REP 437->565|2bs2A1|1.1e-34|33.1|127/0|a.7.3.1|1/1|Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain| HM:SCP:REP 618->893|1b3uA_|2.2e-24|30.8|276/0|a.118.1.2|1/1|ARM repeat| OP:NHOMO 841 OP:NHOMOORG 664 OP:PATTERN ---1-12111111111-11111-3111111111111111111111111-----1-------1111--1 -2-14---------12211-12---111111-11222-21-1----1--1-12211-2--211-122332-1111111----11-111-1-----------------11----------------111-11-1-22-----11-211111--111--------11112121----1------1111111-1-1------1--1---11-1---11---1-1----------11------------------------------------------------------------------------------------------12-11-----------122----1-1--111-522113-213----1--1111111----1-1121212111121---1------1-3212212312-112211121112212-11-11111111-11111111-----2--11211111111-1111111111111---1122111111121112112----1122-----1111121---1111111111111221222112---111111-1211--2------1-111-----1------1--114--1-----------------12211--11-1-111-1-1111111111111111111---11-2------11111111111111111-11111111111111111111112111111111111111111112111111111111111111111--12-----1111-2211-----------1---11111-----22221221312211211-1111111111-222122222222221-111111111111-11---1111-----------------------------------------------11 ----111-----11122211-11121122111111122121222221111111111111111112111-2111112212112222211-111211411111112-2-1--2-----1----12-12---191--21-1--1------------1--1-----1---1-11-2111---1G-111-1131111-1-1--1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 743 STR:RPRED 83.2 SQ:SECSTR cccccccEEccEEccEEEEcccHHHHHHHHHHHTTTccEEEEccccccccccTTccEccccccccccTTcHHHHHHHHHHHTTTcccHHHHHHHHHHHHHHHHHHHHHTccccccTTcccccccccccTTccccccTTcHHHHHHHHTTTTcTTcTTEEEcccEEEccccccccccccccEEETTTccEEEEccccccccccccGGGHHHHHHGcccccccccTTcTHHHHcTTcccccTTcccccEEEEEccTTcccccHHHHTTTcccccTTcccGGGGGcccccccTTcccTTccccccHHHHHHTTHHHHHHTccEEETTEEEEEEccTTTcHHHHHHccHHHHHHHHHHTcccTTTccccccTTcccTTcccccccccccccccTTHHHHHHHHHHHHHHHHHHTTccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHTTcTTTcccccHHHHHHHTTHHHHHHTTcccccccccHHHHHHHHHTTTTTHHHHHHHHHHHcccccccccccccccccccccccccccccEEcccEEcccccccccGGGcccc##############################################GGccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHHHHHcTTccHHHHHHHHHHHHTTTccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHTccHHcHHHHHHHHcccHHHHHHHHHGGTccTTHHHHHHHHTcTTccHHHH######################################################################################################## PSIPRED cccccccccccccccEEEEcccHHHHHHHHHHHHccccEEEEEccccccccccccccccccEEEccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEccHHHHHHHHHHHHHHHHHHcccEEEccEEEEEEEEEccEEEEEEEEEcccccEEEEEccEEEEEcccccccccccccccccccccccccHHHHHHHHHccccEEcccEEEEccccccccccEEEEEEcccccEEEcccccccccccccccHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEccccccccEEEccEEEEccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccEEcHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHccEEEEEEEEcccccccEEEcccccccccccccccccHHHccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHcc //