[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57290.1
DDBJ      :             putative ABC transporter permease
Swiss-Prot:             

Homologs  Archaea  24/68 : Bacteria  430/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
f.58.1
:281 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   171->210 3dhwA PDBj 4e-06 30.0 %
:RPS:SCOP  115->275 2r6gG1  f.58.1.1 * 2e-12 11.8 %
:RPS:PFM   167->250 PF00528 * BPD_transp_1 6e-05 33.3 %
:HMM:PFM   102->273 PF00528 * BPD_transp_1 8.6e-22 24.7 170/185  
:BLT:SWISS 33->278 Y3648_BRUA2 3e-29 30.4 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57290.1 GT:GENE BAD57290.1 GT:PRODUCT putative ABC transporter permease GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2607284..2608129) GB:FROM 2607284 GB:TO 2608129 GB:DIRECTION - GB:PRODUCT putative ABC transporter permease GB:PROTEIN_ID BAD57290.1 LENGTH 281 SQ:AASEQ MSTVALTAAPADTVAEPVRDTPAGASRWRSRLIRVVSVAAAIALWQLLTVNDVRAGLRFDALPTVTEIVAEFGEHLGRQEYYLDIGQSLIRIGTGFGLAAVVGVLAGIGLGRSGLLGDVFGPLTELVRPIPAIALVPVAILLFPSDESGIVFITFTASLFPVLVSTRHAVRALPTIWEDAVRTLGATRTDVLVRVVFPGILPGVFSGLSVGMGVAWICLISAEMISGRLGLGYRTWQSYTIVDYPAVFVGMITIGVLGFATSGLVELAGRRLTRWLPREVR GT:EXON 1|1-281:0| BL:SWS:NREP 1 BL:SWS:REP 33->278|Y3648_BRUA2|3e-29|30.4|240/250| TM:NTM 7 TM:REGION 31->53| TM:REGION 90->112| TM:REGION 120->142| TM:REGION 151->173| TM:REGION 184->206| TM:REGION 211->232| TM:REGION 244->266| SEG 93->111|gtgfglaavvgvlagiglg| RP:PDB:NREP 1 RP:PDB:REP 171->210|3dhwA|4e-06|30.0|40/203| RP:PFM:NREP 1 RP:PFM:REP 167->250|PF00528|6e-05|33.3|84/195|BPD_transp_1| HM:PFM:NREP 1 HM:PFM:REP 102->273|PF00528|8.6e-22|24.7|170/185|BPD_transp_1| GO:PFM:NREP 3 GO:PFM GO:0005215|"GO:transporter activity"|PF00528|IPR000515| GO:PFM GO:0006810|"GO:transport"|PF00528|IPR000515| GO:PFM GO:0016020|"GO:membrane"|PF00528|IPR000515| RP:SCP:NREP 1 RP:SCP:REP 115->275|2r6gG1|2e-12|11.8|161/284|f.58.1.1| OP:NHOMO 1350 OP:NHOMOORG 457 OP:PATTERN ---------------------1-2--------11-1111111132111111111-------------1 -1--2--1113---422----2---A------24447574-324111--11-5-4112--11--12441321---111---31----1-----111----------------------11----11---1------111-----22114322323341-----3323532-1-----------111-----1-21111122211211125111111111-1-1--------27-------1----------------11---------21----11----------111------------------------1---------11214----------2177-----131-2----6512211--41111-----1111------45EGN-34722A422222221223-CBBA9797372-G77764656655CA1--3151633311222222221---44-1-----------------------------1--1-14DBA338898312221664822221265H9796-2663255125554EB161153411----------133125112--1-1--1127--2-3--22122714-211-----------------1-----2-21121-1-1-----------------------211------5444-332222222222-222222221222222222247477-------------------31122122--133333313333--------------2111-----------1---4443413---8564454454345333443---------2---------11-11--2-1-1----------3--------------------------------------------1---1-1---2 -------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------1--1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 40 STR:RPRED 14.2 SQ:SECSTR ##########################################################################################################################################################################HHccTTTTTHHHHHTccTHHHHHHTTHHHHHHHHHHHHHH####################################################################### DISOP:02AL 13-25, 278-281| PSIPRED cccccccccccccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc //