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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57291.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  222/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.94.1
:473 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   36->288 3e4rA PDBj 8e-12 24.6 %
:RPS:PDB   32->341 2de3B PDBj 2e-20 17.6 %
:RPS:SCOP  60->293 1us4A  c.94.1.1 * 2e-15 13.8 %
:HMM:SCOP  30->278 1xs5A_ c.94.1.1 * 1.8e-32 25.6 %
:RPS:PFM   67->262 PF09084 * NMT1 7e-10 33.3 %
:HMM:PFM   123->273 PF09084 * NMT1 1.9e-15 26.8 149/216  
:BLT:SWISS 36->291 SSUA_ECOLI 6e-18 28.1 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57291.1 GT:GENE BAD57291.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2608126..2609547) GB:FROM 2608126 GB:TO 2609547 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD57291.1 LENGTH 473 SQ:AASEQ MKARLVPLLLAAALAAAGCSLAPSDDAPAGTVRVVVGYQSKTINTVTAGTLLRAKGFLEQRLAAITAAGGARYQVEWQDYDTGAPITAQMVAEKIDIGSMGDYPLLINGSRTQANERSATALVSVTGYNPKGALNMVVVPTDSPVTRLADLAGQKVSTSVGSAGHGTLVQALSRAGIDPATGVEVVNQQPQVGASALESHQVSGLSQFVAWPGLLVFQNKAKLLYDGAELNVPTFHGVVARRAYSAEHPEVLQAFLAAQLDATRFLNEQPFEAARLVAEGSGLPQEVVYLYNGPGGTSFDPTVKPSLIEALKGDVPYLKSIGDFADLDIDRFVDPAPLREAFAAFGDYDTALAATGNPNRVRGTDPVCGTEVTDPATAGEVWVDGAPAPQPAADPTCLLRAVRAAQANGAVIRAAYVPDAELGTRWFADKSVWVRDGDRYLPFTTAAAAERYRQAHPGAAPVSYEQAVREVRP GT:EXON 1|1-473:0| BL:SWS:NREP 1 BL:SWS:REP 36->291|SSUA_ECOLI|6e-18|28.1|235/319| TM:NTM 1 TM:REGION 4->22| SEG 3->22|arlvplllaaalaaagcsla| SEG 386->395|apapqpaadp| BL:PDB:NREP 1 BL:PDB:REP 36->288|3e4rA|8e-12|24.6|232/291| RP:PDB:NREP 1 RP:PDB:REP 32->341|2de3B|2e-20|17.6|290/347| RP:PFM:NREP 1 RP:PFM:REP 67->262|PF09084|7e-10|33.3|186/200|NMT1| HM:PFM:NREP 1 HM:PFM:REP 123->273|PF09084|1.9e-15|26.8|149/216|NMT1| RP:SCP:NREP 1 RP:SCP:REP 60->293|1us4A|2e-15|13.8|232/298|c.94.1.1| HM:SCP:REP 30->278|1xs5A_|1.8e-32|25.6|223/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 468 OP:NHOMOORG 223 OP:PATTERN -----------------------------------------------------1-------------- ----1---111---334----1---3------11111111-----1---------------------2-2--------------------------------------------------------------------------1-------2--------------6-6---------------------1-11111111111111113-11-111-1-2-----------2-----------------------------------------------------------------------------------------------------------11-------------------------------------------31316-2----21------------44144233-2--42211-2-11-122----11-1-----11111111----12----------------------------------1---1--24665631111144433333124323231--332-31--22-121-3-----1------------------------------1------------3-----------------------------1------------------------------------------2211-222222221222-222222222222222222233311-------------------22222222--111-111-1212---------------------------------33323-1---715425245624323-665--------------------------1---------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 322 STR:RPRED 68.1 SQ:SECSTR ######################HHHHcccccccEEEEEEEcccccHHHHHHHHHTTHHHHHHHHHHHHHTTTEEEEEccGGGTTHHHHcccTTEEEEEccHHHHHHHHTcTTTTTcTTcEEEEEEEEEccccccEEEEEcTTcccccGGGGTTcEEEEcHHHHHHHHHHHHHHHTTccGGGcEEEEcccTTTccHHHHHTcccEEEEEHHHHHHHHTTTcEEcccGGGcGGGcEEEEEEEEHHHHHHcHHHHHHHHHHHHHHHHHHTTcHHHHHHHHHHHHTccHHHHHHHcTTGGGcccccccHHHHHHHHHHHHHHHHTTccccccHHHHccHHHHHHHHHT################################################################################################################################# DISOP:02AL 1-2, 25-26, 472-473| PSIPRED cHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEcccccccHHHHHHHHHcccHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHcccccEEEEEEEcccccEEEEEEEcccccccHHHHcccEEEEEccccHHHHHHHHHHHccccHHHcEEEEEEcHHHHHHHHHcccEEEEEEEccHHHHHHHccccEEEEEcccccccccEEEEEcHHHHHHcHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHccHHHHHHHHHHHccHHHHHHcccccccccccHHHHccccccHHHccEEEEcccccccccccHHHHHHHHHHHHHccccEEEEEEcccccccHHHHccEEEEEcccccHHHHHHHHHHHHHHHccccccccHHHHHHHccc //