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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57293.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  375/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5d.190.1
:262 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   29->106 3edpB PDBj 1e-04 28.6 %
:BLT:PDB   136->235 2p19C PDBj 3e-06 29.6 %
:RPS:PDB   9->96 2b7oB PDBj 9e-13 12.5 %
:RPS:PDB   136->248 3ddvB PDBj 1e-17 17.9 %
:RPS:SCOP  27->96 3bwgA1  a.4.5.6 * 6e-12 24.3 %
:RPS:SCOP  136->252 3cnvA1  d.190.1.2 * 8e-19 28.2 %
:HMM:SCOP  22->93 1hw1A1 a.4.5.6 * 8.8e-15 45.8 %
:HMM:SCOP  95->251 2fa1A1 d.190.1.2 * 2.2e-35 35.3 %
:RPS:PFM   28->86 PF00392 * GntR 2e-05 50.8 %
:RPS:PFM   136->246 PF07702 * UTRA 2e-15 36.9 %
:HMM:PFM   110->245 PF07702 * UTRA 2e-34 34.6 136/141  
:HMM:PFM   26->86 PF00392 * GntR 2.1e-18 50.8 61/64  
:HMM:PFM   7->44 PF10116 * Host_attach 0.00029 23.7 38/138  
:BLT:SWISS 46->253 DASR_STRAW 6e-20 31.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57293.1 GT:GENE BAD57293.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2609786..2610574) GB:FROM 2609786 GB:TO 2610574 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57293.1 LENGTH 262 SQ:AASEQ MQVSEGEADAMGAQPAPVRRLRADHARQVADLLRHQIHAGAFERALPSEQVLAAEYAASRNTVREALALLRDEGLIERAPKIGTRVARRKVDHGLDELLGLQETLKGHGTVRNEVRVATHRTPPPAVARRLALAPGERVVHVERLRYLADLPLSLDLTYLSPDIGAEVLTHDLENTDIFVLIEQIAGCSLGSADLALESVAADPHTATTLDIPAGAPLLMLERLTRLDDGRPVDLEYIRMRGDRITMRGSLSRSNPEWRVRQ GT:EXON 1|1-262:0| BL:SWS:NREP 1 BL:SWS:REP 46->253|DASR_STRAW|6e-20|31.4|207/254| SEG 123->135|pppavarrlalap| BL:PDB:NREP 2 BL:PDB:REP 29->106|3edpB|1e-04|28.6|77/214| BL:PDB:REP 136->235|2p19C|3e-06|29.6|98/148| RP:PDB:NREP 2 RP:PDB:REP 9->96|2b7oB|9e-13|12.5|88/438| RP:PDB:REP 136->248|3ddvB|1e-17|17.9|112/139| RP:PFM:NREP 2 RP:PFM:REP 28->86|PF00392|2e-05|50.8|59/64|GntR| RP:PFM:REP 136->246|PF07702|2e-15|36.9|111/141|UTRA| HM:PFM:NREP 3 HM:PFM:REP 110->245|PF07702|2e-34|34.6|136/141|UTRA| HM:PFM:REP 26->86|PF00392|2.1e-18|50.8|61/64|GntR| HM:PFM:REP 7->44|PF10116|0.00029|23.7|38/138|Host_attach| GO:PFM:NREP 6 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00392|IPR000524| GO:PFM GO:0005622|"GO:intracellular"|PF00392|IPR000524| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00392|IPR000524| GO:PFM GO:0003677|"GO:DNA binding"|PF07702|IPR011663| GO:PFM GO:0030528|"GO:transcription regulator activity"|PF07702|IPR011663| GO:PFM GO:0045449|"GO:regulation of transcription"|PF07702|IPR011663| RP:SCP:NREP 2 RP:SCP:REP 27->96|3bwgA1|6e-12|24.3|70/78|a.4.5.6| RP:SCP:REP 136->252|3cnvA1|8e-19|28.2|117/156|d.190.1.2| HM:SCP:REP 22->93|1hw1A1|8.8e-15|45.8|72/0|a.4.5.6|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 95->251|2fa1A1|2.2e-35|35.3|156/0|d.190.1.2|1/1|Chorismate lyase-like| OP:NHOMO 629 OP:NHOMOORG 375 OP:PATTERN -------------------------------------------------------------------- -2-27-----1---33211-12--151111113232225121---1---121223--3--2111313353------------2------------------------11-----------------------------------------------------------1--------------21------1-2111--1221--11114222111121222112111211----------------------32111411232221121211221111111111111122222222222111111111-1111111111111---12-------1-1-1--1--------2----34-2--2--1-1--------1111---------1--------22222221221---1--1-------11--1-----1--12-1------------------------1-----------------------------------14412222222-111111--111111411535311332121111--121------1----------------------------1------1-------1------------------------------11---------1111----1111-1--111-------------4222-12333233-244-333441-4343312232242321----222122222222221223222223---11111111111---1------------1----------------11111------13323323312112-111----------111111111112----1-1--111---------------------------------------------------2----2-1-1-- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 245 STR:RPRED 93.5 SQ:SECSTR ########HHHHHHHHHHTTccccccHHHHHHHHHHHHHTTccTccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEETTTEEEEccccccccEEccccccHccccGGGccEEEEEEEEEEEcccHHHHHHTTcTccEEEEEEEEEETTEEEEEEEEEEEGGGTTTccHHHHHHccHHHHHHHHHcccEEEEEEEEEEEEccHHHHHHHTccTTcEEEEEEEEEEETTccEEEEEEEEEEGGGccccccccc######### DISOP:02AL 1-25, 252-262| PSIPRED ccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEcccEEEEEcccccccHHHHccHHHHHHHccccHHHHHHHHHccccHHHHHHHccccccHHHHHHHHHHHcccEEEEEEEEccHHHcccccHHHHccccHHHHHHHHccccEEEEEEEEEEEcccHHHHHHHcccccccEEEEEEEEEcccccEEEEEEEEEcccEEEEEEEEEcccccccccc //