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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57303.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  16/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5d.110.2
:295 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   9->70 1biaA PDBj 5e-06 15.0 %
:RPS:SCOP  11->82 1mkmA1  a.4.5.33 * 1e-07 24.3 %
:HMM:SCOP  6->82 1mkmA1 a.4.5.33 * 8.3e-12 37.3 %
:HMM:SCOP  65->231 1tf1A_ d.110.2.2 * 0.00011 26.9 %
:HMM:PFM   10->60 PF09339 * HTH_IclR 5.4e-12 38.0 50/52  
:BLT:SWISS 30->88 GYLR_STRGR 8e-05 39.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57303.1 GT:GENE BAD57303.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2618931..2619818) GB:FROM 2618931 GB:TO 2619818 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD57303.1 LENGTH 295 SQ:AASEQ MTARRSAPTARVIQVLDFLVEQRGKRFGLSELARALDLAKPTCLGILNELTAAGYLVRDPHLHTYGLGPALIAAGRVAQDSFAISAIARAELAKLSETYRTTCTASAVVGDRISVLESTGPGMVKVGASYHFAPPVGLMYVLWDHDAALDAWLALPPAVPLEQDETRLRQVVAECRERGYLVESLTAAGRRLYALLAGVADRDLPAELREIVGELVTSLGERVYLGADLRPRKEHPVSLLAAPTYGGDGRQNMVLTMYVGASITGAEIHRRGSALVAAADAVTAASGGRKPARTH GT:EXON 1|1-295:0| BL:SWS:NREP 1 BL:SWS:REP 30->88|GYLR_STRGR|8e-05|39.0|59/254| SEG 141->161|vlwdhdaaldawlalppavpl| SEG 185->198|ltaagrrlyallag| SEG 274->285|alvaaadavtaa| RP:PDB:NREP 1 RP:PDB:REP 9->70|1biaA|5e-06|15.0|60/292| HM:PFM:NREP 1 HM:PFM:REP 10->60|PF09339|5.4e-12|38.0|50/52|HTH_IclR| RP:SCP:NREP 1 RP:SCP:REP 11->82|1mkmA1|1e-07|24.3|70/75|a.4.5.33| HM:SCP:REP 6->82|1mkmA1|8.3e-12|37.3|75/0|a.4.5.33|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 65->231|1tf1A_|0.00011|26.9|160/0|d.110.2.2|1/2|GAF domain-like| OP:NHOMO 24 OP:NHOMOORG 16 OP:PATTERN -------------------------------------------------------------------- --------------221----1--11-----112221132---1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 175 STR:RPRED 59.3 SQ:SECSTR ########cHHHHHHHHHHHHTTcccccHHHHHHHHTccHHHHHHHHHHHHHTTcccEEETTTEEEccccEEEEcccEEEEcTTcccHHHHHHHHHHHHHHHHHHHTTccccHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHTTccHHHHHHHHHHHHHHHHHTcHHHHHHHHHHHHHcc################################################################################################################ DISOP:02AL 1-5, 290-295| PSIPRED cccccccHHHHHHHHHHHHHccccccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEcccccEEEEHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccEEEEEEEEccEEEEEEEccccEEEcccccccHHHHHHHHHHcccHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcHHHccccccccccEEEEEcccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHccccccccc //