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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57305.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  54/68 : Bacteria  772/915 : Eukaryota  179/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:258 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   26->254 1fmcA PDBj 8e-21 29.5 %
:RPS:PDB   2->254 1dohB PDBj 5e-32 17.5 %
:RPS:SCOP  19->254 1pwxA  c.2.1.2 * 4e-36 18.9 %
:HMM:SCOP  1->254 1zemA1 c.2.1.2 * 1.1e-73 40.6 %
:RPS:PFM   19->141 PF00106 * adh_short 9e-15 46.2 %
:HMM:PFM   6->172 PF00106 * adh_short 6.9e-29 28.2 163/167  
:BLT:SWISS 26->254 HDHA_ECOLI 3e-20 29.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57305.1 GT:GENE BAD57305.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2621063..2621839 GB:FROM 2621063 GB:TO 2621839 GB:DIRECTION + GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD57305.1 LENGTH 258 SQ:AASEQ MLLQDKVVVVSGVGPGLGRAIAVQSAKAGADVVLASRTESRLTEVAKEIGELGRRALAVPTDIRNEDAVRALVETTRAEFGRVDTVVNNAFAIPPLADLAEVDLDQVRAGFETNVLAALRLTRAFIPDLAASTGSVVMINSAVLHHSRRTFGPYKMAKSSLLALAQSLATELGPQGIRVNSVAPGYIWADNLKWYFNYLAEQRGITAEEVYAETASTIDLRKLPEPDEIADAVVFFASSLARAITGACLDVNAGEYHH GT:EXON 1|1-258:0| BL:SWS:NREP 1 BL:SWS:REP 26->254|HDHA_ECOLI|3e-20|29.5|217/255| SEG 7->18|vvvvsgvgpglg| SEG 157->169|akssllalaqsla| BL:PDB:NREP 1 BL:PDB:REP 26->254|1fmcA|8e-21|29.5|217/255| RP:PDB:NREP 1 RP:PDB:REP 2->254|1dohB|5e-32|17.5|252/271| RP:PFM:NREP 1 RP:PFM:REP 19->141|PF00106|9e-15|46.2|117/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 6->172|PF00106|6.9e-29|28.2|163/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 19->254|1pwxA|4e-36|18.9|227/252|c.2.1.2| HM:SCP:REP 1->254|1zemA1|1.1e-73|40.6|254/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 6282 OP:NHOMOORG 1005 OP:PATTERN 1121223233333332151311115116344722---------11131--422-2111112-333-12 8BM1L1-4335141MWPAB-AQ--LbA9AAAFOTWVEYfm5P3UDA522651C38422--D8E165CJHF71111111-12-J1---14521-211---23C146S4F6B1111111-------221-11112351C88AB22194546832221-----4122315E8J2--11-1--111184322331B4G777778797677786FAEE9E7557BD9CC53332326R5332222122333226776652514414-1-353344323445212212122211-222222222222211222222222122---2221325594443333535326614641311-35-114311111422223341171AI77922121A7UHG238FBEBB8999789999G-EDDEBHEJEPD1ONNCMJMYTPPMFC695F4GA65B76733333333ACD82486---11---------11--------------4QW969MIEKVSUZXWCGEFDOOWSIIIH8EiMaHbRH15DDB73958E8F6JC5523626431111111232C85272311-21-111114641942436655EG11---------------------11-133533457548531443447344445335423--12325-1-11189A71B47676777767-7676767587768567765CGE732467556666676656566C66565571-4555555555551-1513111766714AC711131511111-121ABBCB48594A2DEAD6ACF988A8CA8C1----2---131154344344434BBABCBA33321111131445433----------2--------------------------221112121272 ----118-2-1--4456647899968C122111443143424422254A789EE3647622221312112122111111132122212-6B566H54556313474-482P5485722--114143-5-BG5-342113151141-31114-2213249QKB3HCBC74519J58245-71-13B854B6A83371-13 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 258 STR:RPRED 100.0 SQ:SECSTR TccTTcEEEETTTTcHHHHHHHHHHHHTTcEEEEEEcccHHHHHHHHHHHHHTccEEEEEccTTcHHHHHHHHHHHHHHHccccEEEEccccccccccGGGccHHHHHHHHHHHTHHHHHHHHHHHHHccTTcEEEEEccGGGTcccccccHHHHHHHHHHHHHHHHHHHHHGGGTcEEEEEEEcccccHHHHHHGGGGcTTcTcHHHHHHHHHHHccTTcccccHHHHHHHHHHHHcGGGTTccccEEEEcccHHHH DISOP:02AL 258-259| PSIPRED ccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEccccccccccHHHccHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEcccccccHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccHHHHHHHHHHHHcHHHccccccEEEEccccccc //