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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57310.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  185/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.4.5a.78.1
:224 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   12->86 3ihuB PDBj 4e-08 35.1 %
:BLT:PDB   141->221 3fmsA PDBj 6e-04 29.3 %
:RPS:PDB   9->224 1e2xA PDBj 3e-19 15.4 %
:RPS:SCOP  9->77 1e2xA1  a.4.5.6 * 2e-17 30.4 %
:RPS:SCOP  136->223 2hs5A2  a.78.1.1 * 1e-08 17.4 %
:HMM:SCOP  2->114 1v4rA1 a.4.5.6 * 7.1e-21 46.7 %
:RPS:PFM   14->74 PF00392 * GntR 8e-09 50.8 %
:HMM:PFM   96->217 PF07729 * FCD 1.8e-24 37.5 120/125  
:HMM:PFM   12->74 PF00392 * GntR 1.4e-21 49.2 63/64  
:BLT:SWISS 10->74 HUTC_PSEAE 1e-11 41.5 %
:BLT:SWISS 138->224 NEDR_MICVI 6e-04 28.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57310.1 GT:GENE BAD57310.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2625283..2625957) GB:FROM 2625283 GB:TO 2625957 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57310.1 LENGTH 224 SQ:AASEQ MMVPQVRRHPLAAQTAELLLERIRAGEWALGHRLPGETTLAAQLGVGRSTVREAIRELAGKGVLDSRQGAGVFVTALDVTEDWDAMLRRADIAAVIEARIAIEAEAAALAARRRTPADLRALRRSLAAREPHGEPIPDHVDADMAFHRTVVVAAHNDVLTQLFDSFLPRLRPAMIDMLAIRPVPSEQADHATHARLVEAIAAGDPTAAAEFSRAHLTQLKAAFA GT:EXON 1|1-224:0| BL:SWS:NREP 2 BL:SWS:REP 10->74|HUTC_PSEAE|1e-11|41.5|65/250| BL:SWS:REP 138->224|NEDR_MICVI|6e-04|28.6|84/138| SEG 88->129|rradiaavieariaieaeaaalaarrrtpadlralrrslaar| BL:PDB:NREP 2 BL:PDB:REP 12->86|3ihuB|4e-08|35.1|74/199| BL:PDB:REP 141->221|3fmsA|6e-04|29.3|75/206| RP:PDB:NREP 1 RP:PDB:REP 9->224|1e2xA|3e-19|15.4|214/222| RP:PFM:NREP 1 RP:PFM:REP 14->74|PF00392|8e-09|50.8|61/64|GntR| HM:PFM:NREP 2 HM:PFM:REP 96->217|PF07729|1.8e-24|37.5|120/125|FCD| HM:PFM:REP 12->74|PF00392|1.4e-21|49.2|63/64|GntR| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00392|IPR000524| GO:PFM GO:0005622|"GO:intracellular"|PF00392|IPR000524| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00392|IPR000524| RP:SCP:NREP 2 RP:SCP:REP 9->77|1e2xA1|2e-17|30.4|69/73|a.4.5.6| RP:SCP:REP 136->223|2hs5A2|1e-08|17.4|86/138|a.78.1.1| HM:SCP:REP 2->114|1v4rA1|7.1e-21|46.7|90/0|a.4.5.6|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 307 OP:NHOMOORG 188 OP:PATTERN --------------------------------------------1----------------------- ----3---------2------1--11-----111111646------1-1--1111-----111-11223221----------4----------------------21--1--------------------------111--------------------------------------------1-------1---------------1-2-------1---1---111111-1--------------------2------1---1111-----------1111111---------1-----------1------11---1111----1----------1------------1---------------11---------------------------1-1-11-111112-------------111133233443-------1--12--1---------22--1-------------------------------------133123333231111133141111113325442-1332----1212241--2----21-----------11--1-----11------------1--------------------------------------1-1-----------------------------------------1---------------------------------------------------------1-------------------------------------1----------------------1-----22233222-33331--1-------------------1------11111------------------------------------------------------------------ --------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 224 STR:RPRED 100.0 SQ:SECSTR HccccccGccHHHHHHHHHHHHHHTTcccTTcccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEETTEEEEEccHHHHccGGHHHcTTTHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHGGGTccccHHHHHHHHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHHHTTcHHHHccHHHHHHHHHHHHHHHHTcGGGHHHHHHHHHHHHHHHHH DISOP:02AL 1-12| PSIPRED ccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccHHHHHHHHHHHHcccEEEEcccEEEEEcccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHc //