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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57313.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  5/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5d.110.2
:294 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   15->71 1bibA PDBj 3e-08 22.2 %
:RPS:PDB   91->154 3d3oB PDBj 1e-04 9.4 %
:RPS:SCOP  18->71 1mkmA1  a.4.5.33 * 1e-07 24.1 %
:HMM:SCOP  13->80 1mkmA1 a.4.5.33 * 1.7e-09 41.2 %
:HMM:SCOP  78->295 1td5A_ d.110.2.2 * 6.6e-12 28.0 %
:HMM:PFM   18->64 PF09339 * HTH_IclR 2.1e-09 29.8 47/52  
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57313.1 GT:GENE BAD57313.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2627065..2627949) GB:FROM 2627065 GB:TO 2627949 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57313.1 LENGTH 294 SQ:AASEQ MTDTQTGAARSPSPPTRRVVEILTLLAGAAEPLPVAAIAERLGIARATATAVLAELDLAGWAVRVPDRGYRLGPGLLTLTGPPLPPEIGDILQELATEAGCGATLSRIEPDALTVLDVRHGPDRMVPGIPVGHRIPLRFPAGAAVMPWRPAAEQNTWLATTADADRRTAGALLTLVKDRGVAVFRPRSDDAGTVDLLADLLAAVGTELLHPHLRTRALRQLTALTARPFTRHELDGEEQLPLSYLAAPVFDGAGTAAYEVQLGPLRATTTRADRDRYIAITLAAARALTAALGG GT:EXON 1|1-294:0| SEG 72->86|lgpglltltgpplpp| SEG 158->173|lattadadrrtagall| SEG 189->206|ddagtvdlladllaavgt| SEG 213->227|lrtralrqltaltar| SEG 266->276|ratttradrdr| SEG 278->292|iaitlaaaraltaal| RP:PDB:NREP 2 RP:PDB:REP 15->71|1bibA|3e-08|22.2|54/294| RP:PDB:REP 91->154|3d3oB|1e-04|9.4|64/163| HM:PFM:NREP 1 HM:PFM:REP 18->64|PF09339|2.1e-09|29.8|47/52|HTH_IclR| RP:SCP:NREP 1 RP:SCP:REP 18->71|1mkmA1|1e-07|24.1|54/75|a.4.5.33| HM:SCP:REP 13->80|1mkmA1|1.7e-09|41.2|68/0|a.4.5.33|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 78->295|1td5A_|6.6e-12|28.0|168/0|d.110.2.2|1/1|GAF domain-like| OP:NHOMO 6 OP:NHOMOORG 5 OP:PATTERN -------------------------------------------------------------------- --------------1------1--1------1----2-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 154 STR:RPRED 52.4 SQ:SECSTR HHHHHTHHTcTTccHHHHHHHHHHHHTHTcccccHHHHHHHHTccHHHHHHHHHHHHHTTcccEEETTTEEEcccHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEETTEEEEEEEEcccccccccccccccEEGGcHHHHHTTcHHHHHHH############################################################################################################################################ DISOP:02AL 1-16| PSIPRED cccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEcccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEccEEEEEEEEccccccEEEEccccccccHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccEEEEEEEEcccccEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHcc //