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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57314.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  55/68 : Bacteria  877/915 : Eukaryota  192/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:263 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   32->253 3gafA PDBj 5e-35 40.4 %
:RPS:PDB   5->251 2ae1A PDBj 7e-45 29.8 %
:RPS:SCOP  4->253 1ahhA  c.2.1.2 * 7e-45 37.2 %
:HMM:SCOP  6->250 1zemA1 c.2.1.2 * 6.6e-76 43.9 %
:RPS:PFM   11->172 PF00106 * adh_short 1e-21 44.7 %
:HMM:PFM   12->175 PF00106 * adh_short 3.7e-32 30.8 159/167  
:BLT:SWISS 8->253 DHG_BACSU 2e-33 32.9 %
:PROS 147->175|PS00061|ADH_SHORT

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57314.1 GT:GENE BAD57314.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2628079..2628870 GB:FROM 2628079 GB:TO 2628870 GB:DIRECTION + GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD57314.1 LENGTH 263 SQ:AASEQ MILDRFRIAGQVAVVTGAGRGLGRAIAVAFAEAGADVLIAARTKQQLDEVAEQITAAGRQAHVVAADLSDPETAAGLAEAAVQRFGRLDIVVNNVGGAMPSPLLDTTPQAMIEAFTFNVANAHALIRAAVPHMLATADGGSIVNITSTMGRLPGRAFAAYGTAKAALAHYTKLAALDLNPRIRVNAIAPGSILTSSLEVVAGNEQLRTELETKTPLHTIGEPADIAAAALYLVSPAGKYLTGKVLEPDGGLIQPNLAIPIPDL GT:EXON 1|1-263:0| BL:SWS:NREP 1 BL:SWS:REP 8->253|DHG_BACSU|2e-33|32.9|246/261| PROS 147->175|PS00061|ADH_SHORT|PDOC00060| BL:PDB:NREP 1 BL:PDB:REP 32->253|3gafA|5e-35|40.4|218/249| RP:PDB:NREP 1 RP:PDB:REP 5->251|2ae1A|7e-45|29.8|242/252| RP:PFM:NREP 1 RP:PFM:REP 11->172|PF00106|1e-21|44.7|161/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 12->175|PF00106|3.7e-32|30.8|159/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 4->253|1ahhA|7e-45|37.2|247/253|c.2.1.2| HM:SCP:REP 6->250|1zemA1|6.6e-76|43.9|244/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 19172 OP:NHOMOORG 1124 OP:PATTERN 2221244AB9B9A99629353221C55A777D12---------21154--622-24122-43854134 LLj4*21566D794s**VV-V*55y*VUVVVm********7*G*VOH86HD2RNMA3G11VPd4SPghlWE11113112298Y21544667728221--95W6FF*EjAN222222211111114A67BF965CA9IJJPO222PFMFJIAA87633443763494GKEgB332234334234MD9BC881KASHHIHILIKFIJIKLISJRRKSIHJCIJPNLGBAAAB9Np977777667777776BBBBC92E19B16121DG55896888BC888646787833333333343333575577787776623322233375359D55544445478566278683411B9222C8123325333356423F2LwLLW33333XH*tw69DjWadVLMNMKLMMNMb-MTbOKwMXl*j2*rrTyrx*****dfKTGTSZUMSVMMTBBBBBBBBUWWEACKE333444442212224322212211222229P**RBJrgTk******YXXYTvv**cbbbCZ*h*d**o4AVTRPCMJJZPfM*nAKD5B8DE7234222235CQH88Q7F433324533426986F74A7ACCASX34254544433532522222226344588BCABGHFBKE78A9AC9FD9987C6EB89C1-2375911-111DFHJ8MBEGGFECDCFF-GFFGGCDEGEGCFEEEFEFSXSLA9ACC8ACCBCCCCCABACAWDDADCBD51AAAAAAA9AAAA111945343GHFG3FNNM111828122222463NOOTPAKAHBQAXXVUNTcjMRPZSNSPT4343353333656H76776CB78AOQLMNLJBBD75553364DC7688--------1-4--------3-1------2-------54421666753G4 11--HIK-733-6BFlylmtkpi*x*zOQEIIIPONLWPSKTUMLKlekws***adfRRSOQDDQ9694G66IEK463569GFHKH6D-f*TyJvJFFHEJBIMJE-NUC*VhPVWIB7BADQATM7Q7j*U-QPY99D6RDFTF6F7AAM43PEHGQdqyaEtWQJOMWXMdWR9GD8*545FXMhd*ivRGFgORTI ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 263 STR:RPRED 100.0 SQ:SECSTR ccGGTTccTTcEEEEETcccHHHHHHHHHHHTTTcEEEEEEccHHHHHHHHHHHHHTTccEEEEEccTTcHHHHHHHHHHHHHHTTTcccEEEEccccccccGGGccHHHHHHHHHHHTHHHHHHHHHHHHHHHTGTccEEEEEEccGGGTcccTTcHHHHHHHHHHHHHHHHHHHHTGGTEEEEEEEEcccccccHHHHGGHHHHHHHHHHTccccccccHHHHHHHHHHHHcGGGTTccccEEEEcTTGccccccTTcTTc DISOP:02AL 1-4, 262-263| PSIPRED cccccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEcccccccccHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccEEEccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccEEEEEcHHHHHcccccccccc //