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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57319.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  371/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5d.110.2
:274 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   23->195 2g7uC PDBj 4e-20 37.1 %
:RPS:PDB   19->71 3dp7B PDBj 2e-04 20.8 %
:RPS:PDB   95->265 3d3oB PDBj 2e-15 8.1 %
:RPS:SCOP  23->94 1mkmA1  a.4.5.33 * 2e-08 15.3 %
:RPS:SCOP  96->266 1td5A  d.110.2.2 * 2e-20 22.5 %
:HMM:SCOP  23->95 1mkmA1 a.4.5.33 * 5.9e-14 41.1 %
:HMM:SCOP  79->270 1tf1A_ d.110.2.2 * 6.9e-39 42.9 %
:RPS:PFM   25->63 PF09339 * HTH_IclR 2e-04 53.8 %
:RPS:PFM   144->195 PF01614 * IclR 1e-05 59.6 %
:HMM:PFM   139->263 PF01614 * IclR 4.4e-32 43.1 123/129  
:HMM:PFM   26->74 PF09339 * HTH_IclR 1.8e-16 42.9 49/52  
:BLT:SWISS 26->195 KIPR_BACSU 8e-20 30.2 %
:PROS 86->93|PS00687|ALDEHYDE_DEHYDR_GLU
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57319.1 GT:GENE BAD57319.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2632215..2633039 GB:FROM 2632215 GB:TO 2633039 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57319.1 LENGTH 274 SQ:AASEQ MSVEMVSHPESGWAGAGRAAPPVSMIERMTAILDAFDADTPTVTLLGVAERTGLPRSTVHRILDQMVRLRWLAHAPGGYRLGLRAFELGGLAADHNEIREAVSPLLQDLCQRTGMAGHLAVLDGRDVLCLDKAGGRQAAAIPTRLGARLPAHSTALGKALLATLEPSIVEAALREKLPQLTARTIGDRAELHRELARVRVRQGGVAVDNEESVDGVCCVAVPVRGRGAAAAALSLSGQVGGERGALDTARLARMLSEAAQEAGRALFPRHERLR GT:EXON 1|1-274:0| BL:SWS:NREP 1 BL:SWS:REP 26->195|KIPR_BACSU|8e-20|30.2|169/250| PROS 86->93|PS00687|ALDEHYDE_DEHYDR_GLU|PDOC00068| SEG 196->207|arvrvrqggvav| SEG 219->241|vavpvrgrgaaaaalslsgqvgg| BL:PDB:NREP 1 BL:PDB:REP 23->195|2g7uC|4e-20|37.1|170/244| RP:PDB:NREP 2 RP:PDB:REP 19->71|3dp7B|2e-04|20.8|53/350| RP:PDB:REP 95->265|3d3oB|2e-15|8.1|161/163| RP:PFM:NREP 2 RP:PFM:REP 25->63|PF09339|2e-04|53.8|39/52|HTH_IclR| RP:PFM:REP 144->195|PF01614|1e-05|59.6|52/127|IclR| HM:PFM:NREP 2 HM:PFM:REP 139->263|PF01614|4.4e-32|43.1|123/129|IclR| HM:PFM:REP 26->74|PF09339|1.8e-16|42.9|49/52|HTH_IclR| GO:PFM:NREP 2 GO:PFM GO:0003677|"GO:DNA binding"|PF09339|IPR005471| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF09339|IPR005471| RP:SCP:NREP 2 RP:SCP:REP 23->94|1mkmA1|2e-08|15.3|72/75|a.4.5.33| RP:SCP:REP 96->266|1td5A|2e-20|22.5|169/179|d.110.2.2| HM:SCP:REP 23->95|1mkmA1|5.9e-14|41.1|73/0|a.4.5.33|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 79->270|1tf1A_|6.9e-39|42.9|182/0|d.110.2.2|1/1|GAF domain-like| OP:NHOMO 1211 OP:NHOMOORG 376 OP:PATTERN ------------------------6--22-32------------------------------------ --3171-2335---22111-14---E11111-533589ON12-33541--11CBF3------5168K6731----122----3----1-----1-------------------------------------------1111----3-------------------------------------4221311-21111111121121111123221112113421--------1-----------------------1-------------------------------------------------------------------13--1--------------1--------1----11--1-1214-1-2---------------2-634--52313133233332323-121--31162--322224443354721--114---112-11111111311--1----------------------------------3--1A76975575857666889B777746D4ACGH711552224328361A61111---------------111-1-----1-------121143211-----------1---------------------11--1-1-2---------------------------1-1------32322316445655534-445354534346455555666633-1-4243434444434334532333331-211221122222----------------32---1-1---------2221213---4-3222123111231-222-------------1------1-12-----------------------------------------------------------------11111--- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 247 STR:RPRED 90.1 SQ:SECSTR ##################THHHHHHHHHHTTHHHHHHHcTTcEEHHHHHHHHTccHHHHHHHHHHHHHTTcEEEEEEETTEEEEEEEEccccTTcHHHHHHHHHHHHHHHHHHccEEEEEEEETTEEEEEEEEcccccccccccccccEEGGcHHHHHTTcHHHHHHHHHHHHHHHHHHHHGGGTcccccHHHHH#HHHHHHHcEEEEEccccTTEEE###EEEEccccTTccEEEEEEEHHHHHHTHHHHHHHHHHHHHHHTcccccc##### DISOP:02AL 1-25, 270-274| PSIPRED ccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccEEEHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccEEEEEEEccEEEEEEEEcccccEEEEEcccccccHHccHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccEEEEcccHHcccEEEEEEEEccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccc //