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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57325.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  27/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:217 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   13->168 2hytA PDBj 1e-05 32.7 %
:RPS:PDB   17->179 3bjbE PDBj 4e-11 10.7 %
:RPS:SCOP  17->84 1t33A1  a.4.1.9 * 1e-09 23.5 %
:RPS:SCOP  89->187 1t56A2  a.121.1.1 * 4e-05 11.1 %
:HMM:SCOP  5->92 1t33A1 a.4.1.9 * 2e-15 36.4 %
:HMM:SCOP  118->188 2i10A2 a.121.1.1 * 0.00043 21.1 %
:HMM:PFM   21->66 PF00440 * TetR_N 1.2e-16 47.8 46/47  
:HMM:PFM   88->122 PF00482 * GSPII_F 0.00041 40.0 35/124  
:HMM:PFM   2->13 PF07640 * QPP 0.00082 58.3 12/36  
:BLT:SWISS 23->98 BETI_OCHA4 6e-04 31.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57325.1 GT:GENE BAD57325.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2638362..2639015) GB:FROM 2638362 GB:TO 2639015 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57325.1 LENGTH 217 SQ:AASEQ MFNQQPVSQGSPAELTTAARIRDAAIEVFGDRGFDVGVRVIAAAAGVSPGLVNHHFGSKDGLRAACDERVLQLIHDEKTKALLAPDTGAGLLAAMAEVEAYGPLVAYMVRSLEAGGPMAESLFEHMVADAEDYMRRGVEAGVIKPSRDPKARARHLMLANVGATLLWVRLHQRDGETIDFRAAIRRITEELTGPALELYTQGLLTDPTLLDEITKER GT:EXON 1|1-217:0| BL:SWS:NREP 1 BL:SWS:REP 23->98|BETI_OCHA4|6e-04|31.6|76/100| SEG 36->47|vgvrviaaaagv| BL:PDB:NREP 1 BL:PDB:REP 13->168|2hytA|1e-05|32.7|147/188| RP:PDB:NREP 1 RP:PDB:REP 17->179|3bjbE|4e-11|10.7|159/176| HM:PFM:NREP 3 HM:PFM:REP 21->66|PF00440|1.2e-16|47.8|46/47|TetR_N| HM:PFM:REP 88->122|PF00482|0.00041|40.0|35/124|GSPII_F| HM:PFM:REP 2->13|PF07640|0.00082|58.3|12/36|QPP| RP:SCP:NREP 2 RP:SCP:REP 17->84|1t33A1|1e-09|23.5|68/88|a.4.1.9| RP:SCP:REP 89->187|1t56A2|4e-05|11.1|99/120|a.121.1.1| HM:SCP:REP 5->92|1t33A1|2e-15|36.4|88/0|a.4.1.9|1/1|Homeodomain-like| HM:SCP:REP 118->188|2i10A2|0.00043|21.1|71/0|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain| OP:NHOMO 35 OP:NHOMOORG 27 OP:PATTERN -------------------------------------------------------------------- ----1---------22311-11--3111111-21111-11-----21----------1--11------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 195 STR:RPRED 89.9 SQ:SECSTR ############HHcHHHHHHHHHHHHHHHHccGGGccHHHHHHHTccHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccTTTcGGGTHHHHHHHHHHHHHHHHHTcccccHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHHcHcHHHHHccHcccH########## DISOP:02AL 1-20| PSIPRED ccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcc //