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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57326.1
DDBJ      :             putative acyl-CoA oxidase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  71/915 : Eukaryota  174/199 : Viruses  0/175   --->[See Alignment]
a.29.3e.6.1
:643 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   85->642 1w07B PDBj 6e-57 31.1 %
:RPS:PDB   1->642 2ddhA PDBj 5e-55 25.1 %
:RPS:SCOP  2->262 1is2A3  e.6.1.2 * 2e-26 29.2 %
:RPS:SCOP  304->460 1is2A1  a.29.3.2 * 7e-13 28.0 %
:RPS:SCOP  489->642 1is2A2  a.29.3.2 * 6e-19 20.1 %
:HMM:SCOP  12->262 1is2A3 e.6.1.2 * 1.5e-50 35.4 %
:HMM:SCOP  274->461 1is2A1 a.29.3.2 * 2.4e-45 37.8 %
:HMM:SCOP  488->633 1is2A2 a.29.3.2 * 9.1e-35 32.2 %
:RPS:PFM   134->155 PF02770 * Acyl-CoA_dh_M 2e-04 72.7 %
:RPS:PFM   305->437 PF00441 * Acyl-CoA_dh_1 2e-05 34.8 %
:RPS:PFM   497->641 PF01756 * ACOX 5e-21 33.8 %
:HMM:PFM   506->640 PF01756 * ACOX 2e-19 25.9 135/186  
:HMM:PFM   133->191 PF02770 * Acyl-CoA_dh_M 2.3e-16 41.2 51/52  
:HMM:PFM   277->437 PF00441 * Acyl-CoA_dh_1 6.2e-15 27.9 140/150  
:HMM:PFM   22->126 PF02771 * Acyl-CoA_dh_N 2.4e-05 26.5 102/113  
:BLT:SWISS 77->642 ACOX2_ARATH 2e-86 36.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57326.1 GT:GENE BAD57326.1 GT:PRODUCT putative acyl-CoA oxidase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2639093..2641024 GB:FROM 2639093 GB:TO 2641024 GB:DIRECTION + GB:PRODUCT putative acyl-CoA oxidase GB:PROTEIN_ID BAD57326.1 LENGTH 643 SQ:AASEQ MATGSPTTADHLRAALDGPWRDIRQQARRELADERFLGDPNLDYKAARARVLDQMRLLAAMDYAKRGFRLENGGVGDPGGAVTALEMVAYADLSLWVKSGVQWGLFGGAVENLGTERHREYIKQLISLDLLGCFAMTESGHGSDVASLETTATYDPATQEFVIHSPTPSARKDYIGGAAEHARMAAVFAQLITQGEGRGVHCFLVPIRDEQGADLPGVTTSDDGLKGGLLGVDNGRIVFDHVRIPRENLLNRYADVEPDGTYSSPIENPSRRFFTTLGTLVRGRISVGGAAAAGARVALSIAVRYALQRRQFADPDSGTETVLMDYRMHQRRLLPLVAKSFAYAFAQNDLVRRMHVIQTGQNLDPGAQRALEKRAAGLKVAQTRHATRAIQECREACGGAGYLTENRLVTLKADTDVFTTFEGDNVVLTQLVAKELLTAYADEVQDLDALGWVRFAATMAGDVVRKRSGVRQLIQTLRDRSDESVDEGDLSRRSTQLQLFADREDYLVRTAAHRLRARAEDTTPFEGFNNAQDHILAAGSAHIDRLVLEAFIEGIGEIEDPEARALAETVCDLFVYTLLEENLAWYIMHRFMSVERAKAVRRGVNELVDRLRPHALTLVEAMGVPEEMLHAAMLHDASVYQRS GT:EXON 1|1-643:0| BL:SWS:NREP 1 BL:SWS:REP 77->642|ACOX2_ARATH|2e-86|36.2|549/692| SEG 222->235|ddglkggllgvdng| SEG 281->303|vrgrisvggaaaagarvalsiav| BL:PDB:NREP 1 BL:PDB:REP 85->642|1w07B|6e-57|31.1|527/658| RP:PDB:NREP 1 RP:PDB:REP 1->642|2ddhA|5e-55|25.1|586/622| RP:PFM:NREP 3 RP:PFM:REP 134->155|PF02770|2e-04|72.7|22/53|Acyl-CoA_dh_M| RP:PFM:REP 305->437|PF00441|2e-05|34.8|115/150|Acyl-CoA_dh_1| RP:PFM:REP 497->641|PF01756|5e-21|33.8|145/178|ACOX| HM:PFM:NREP 4 HM:PFM:REP 506->640|PF01756|2e-19|25.9|135/186|ACOX| HM:PFM:REP 133->191|PF02770|2.3e-16|41.2|51/52|Acyl-CoA_dh_M| HM:PFM:REP 277->437|PF00441|6.2e-15|27.9|140/150|Acyl-CoA_dh_1| HM:PFM:REP 22->126|PF02771|2.4e-05|26.5|102/113|Acyl-CoA_dh_N| GO:PFM:NREP 8 GO:PFM GO:0003995|"GO:acyl-CoA dehydrogenase activity"|PF02770|IPR006091| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02770|IPR006091| GO:PFM GO:0016627|"GO:oxidoreductase activity, acting on the CH-CH group of donors"|PF00441|IPR006090| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00441|IPR006090| GO:PFM GO:0003997|"GO:acyl-CoA oxidase activity"|PF01756|IPR002655| GO:PFM GO:0005777|"GO:peroxisome"|PF01756|IPR002655| GO:PFM GO:0006635|"GO:fatty acid beta-oxidation"|PF01756|IPR002655| GO:PFM GO:0055114|"GO:oxidation reduction"|PF01756|IPR002655| RP:SCP:NREP 3 RP:SCP:REP 2->262|1is2A3|2e-26|29.2|253/267|e.6.1.2| RP:SCP:REP 304->460|1is2A1|7e-13|28.0|157/189|a.29.3.2| RP:SCP:REP 489->642|1is2A2|6e-19|20.1|154/181|a.29.3.2| HM:SCP:REP 12->262|1is2A3|1.5e-50|35.4|243/0|e.6.1.2|1/1|Acyl-CoA dehydrogenase NM domain-like| HM:SCP:REP 274->461|1is2A1|2.4e-45|37.8|188/189|a.29.3.2|1/1|Acyl-CoA dehydrogenase C-terminal domain-like| HM:SCP:REP 488->633|1is2A2|9.1e-35|32.2|146/0|a.29.3.2|1/1|Acyl-CoA dehydrogenase C-terminal domain-like| OP:NHOMO 799 OP:NHOMOORG 245 OP:PATTERN -------------------------------------------------------------------- ----12-----1-1111----11111-----111111211----11111111211122----1--121141------------------------------1--1---1----------------------------------------------------------------------------------------------------11---------------------------------------------------------------------------------------------------------------------------------------------------------2-----------------------------------1---1-1----------------------------------------1-----------------------------------------------1----1---1-----1------------------1-1---------11--------1----------------11-----------------------------1-------------------------------1-----------------------------------------------------------------------------------11-----------------------------------------------------1------------------------------------11----1----------------------------------------------------------------------------------------------------- ----981-----11422332322322644-111111432323333311--1124--------633111121131211111133343---29221111111324867-427G5433444244454C8495Gf7-786354394453243226416433357862A43895757B6B1333A12144624725311DAD92 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 642 STR:RPRED 99.8 SQ:SECSTR HHHccccHHHHHHHHTcHHHHHHHHHHHHHHHTcHHTTGGGccccGGGccHHHHHHHHHHHHHHHHHHHHHTTcccHHTccHHHHHHHHHHHTTcccTTHHHHHTHHHHHccccHHHHHHHHHHHHTTcccEEEEcccTTccccGGGcccEEEEETTTTEEEEEccccTTcEEccTTTTTTccEEEEEEEEEETTEEEEEEEEEEEcccTTTcccTTEEEEEcccccccTTcccEEEEEccEEEEGGGccccccEEcTTccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccTTcccccGGGcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHcGGGcHHHHHHHHGGGGTccccHHHHHHHHHHHHHHHHHHHHHTccccGGGGGGGGcccccHHHHHHHHHHHHHTTcccGGGHcGGcTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHGGGcccHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTcccHHHHHHHHHHHHHHHHHHGGGHHHHHHTTcccHHHHTccTcTTccHHHH# DISOP:02AL 1-3, 442-449, 642-643| PSIPRED cccccccHHHHHHHHccHHHHHHHHHHHHHHccHHHcccccccccHHHcccHHHHHHHHHcccccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHcccccccccHHHcEEEEEEEccccEEEEEcccccEEEEEcccccccccEEEEEEEEcccccccccEEEEEEcccccccccccEEEccccccccccccccEEEEEccEEccHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHccHHHccccccccc //