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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57330.1
DDBJ      :             putative cholesterol oxidase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  82/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
c.3.1
:580 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   229->526 3coxA PDBj 7e-18 36.3 %
:RPS:PDB   17->525 1cf3A PDBj 1e-21 12.6 %
:RPS:SCOP  22->293 1kdgA1  c.3.1.2 * 5e-12 13.5 %
:RPS:SCOP  464->538 1tzlA1  c.3.1.2 * 7e-14 25.3 %
:HMM:SCOP  17->533 1cf3A1 c.3.1.2 * 1.4e-44 29.5 %
:RPS:PFM   464->524 PF05199 * GMC_oxred_C 2e-10 49.2 %
:HMM:PFM   467->525 PF05199 * GMC_oxred_C 9.8e-19 42.4 59/145  
:HMM:PFM   22->293 PF00732 * GMC_oxred_N 2.3e-11 23.4 252/298  
:BLT:SWISS 229->526 CHOD_BREST 9e-18 34.9 %
:PROS 205->216|PS00198|4FE4S_FER_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57330.1 GT:GENE BAD57330.1 GT:PRODUCT putative cholesterol oxidase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2644165..2645907) GB:FROM 2644165 GB:TO 2645907 GB:DIRECTION - GB:PRODUCT putative cholesterol oxidase GB:PROTEIN_ID BAD57330.1 LENGTH 580 SQ:AASEQ MTVKSSHRTDGDGEEVMAEFDYDVVVIGSGFGGSVAALRLTEKGYRVGVLEAGRRWDAADLPATNWNLRKSIWAPKLGLTGPQQISILGKCAVFSGAGVGGGSLIYGNTLYEPLPAFYTDRQWAHITDWRSELAPYYDQAKRMLGVAPNPRTTPADEIIKEVAEDIGVADTFHPTQVGVFFNEDRQGEEVDDPYFGGAGPRRSGCVHCARCFTGCPHNAKNTTTTNYLYLAEQAGARVHELTTATAVRPLPGGGYAVDTERSGRWIRKEPRTFTAEQVVFAGAALGTQKLLHRMRDEGVLPGLSPRLGELTRSNSEAILNVASRSRYDFAQGVAITSSIHPEPNTHVEVCHYGKGQNALATMAVPLVDGGAFRFLRFLLAILTHPLAFLRSRVPYRGSEKSVILLVMQSLDNSLTSFRKRGALRTEQGTGEPNPTWIPLAHDIARRFADKIDGDTHGLIMDVFNIPATAHYIGGCVIGESPRSGVVDPYQRVFGHPGLHVADGSAVTANLGVNPSLTITAQAERAMAFWPNKGEPDPRPELGAPYRRIDPVRPVRPTVPEHAPGALRLPITPVDPPVPAP GT:EXON 1|1-580:0| BL:SWS:NREP 1 BL:SWS:REP 229->526|CHOD_BREST|9e-18|34.9|249/552| PROS 205->216|PS00198|4FE4S_FER_1|PDOC00176| SEG 24->35|vvvigsgfggsv| SEG 92->103|avfsgagvgggs| SEG 369->380|ggafrflrflla| SEG 569->579|pitpvdppvpa| BL:PDB:NREP 1 BL:PDB:REP 229->526|3coxA|7e-18|36.3|248/500| RP:PDB:NREP 1 RP:PDB:REP 17->525|1cf3A|1e-21|12.6|507/581| RP:PFM:NREP 1 RP:PFM:REP 464->524|PF05199|2e-10|49.2|61/140|GMC_oxred_C| HM:PFM:NREP 2 HM:PFM:REP 467->525|PF05199|9.8e-19|42.4|59/145|GMC_oxred_C| HM:PFM:REP 22->293|PF00732|2.3e-11|23.4|252/298|GMC_oxred_N| GO:PFM:NREP 1 GO:PFM GO:0016614|"GO:oxidoreductase activity, acting on CH-OH group of donors"|PF05199|IPR007867| RP:SCP:NREP 2 RP:SCP:REP 22->293|1kdgA1|5e-12|13.5|252/360|c.3.1.2| RP:SCP:REP 464->538|1tzlA1|7e-14|25.3|75/379|c.3.1.2| HM:SCP:REP 17->533|1cf3A1|1.4e-44|29.5|332/0|c.3.1.2|1/1|FAD/NAD(P)-binding domain| OP:NHOMO 108 OP:NHOMOORG 83 OP:PATTERN -------------------------------------------------------------------- -12-2------1-121111-12111111111111113222-111----------1-----121-3212121-----------------------------------------------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1111--1-1111-1--1--1-----11-------1---------1--------------21----------------------111151-------------------------------------------------------------------------------------------------------------------------------------------------------------------------11-----------------11-11-------------1----------------------------------------------------111233------------------------------------------------- --------------------------------------------------------------------------------------------------------------1---------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 546 STR:RPRED 94.1 SQ:SECSTR ################TTTcEEEEEEEcccHHHHHHHHHHTTcTccEEEEEcccccTTccHHHHcGGGTTTTTTcTTcEEccccTTTccccEEcccccTTGGGGTcccccccccHHHHHHHHHTTcTTccHHHHHHHHHHEEEccccHHHHHHTccccGGGccccccEEEccccccccccTHHHHHHTTTccccccTTcccccEEEcccccTcccTTcccccHHHHHTGGTTcTTEEEEEccEEEEEEEEccccccEEEEEEEEETTEEEEEEEEEEEEEcccTTTHHHHHHHTGGGTccccccccTTccccEEEEEEEHHHHHGGGHHHHHHHHHHcHHHHHHHHHHTTccccHHHHHHHccEEEEEEEEcTTEEEEEEEEcccccccEEEEccccGGGccEEEEccTTccHHHHHHHHHHHHHHHHHTcGGGGGTEEEEEEcGGGccTTccHHHHHHHGGGccEEccccccTTccccGGGTccccTTcccTTcccEEEccTTccccccccccHHHHHHHHHHHHHHEEEEEEEEEEccEEEEEEEEEccccHHHHHHHHH################## DISOP:02AL 3-5, 536-547, 579-580| PSIPRED cEEEEEEEEcccccccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEccccccccccccccHHHHHHHccccccccccccccccccEEEEEccccccccEEEEEEEEcccccHHHHcccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccccccccccccccHHHHHHccccccccccccccccccccEEccccccccccccccccHHHHHHHHHHcccEEEEEEEEEEEEEEccccEEEEEEEcccEEEcEEEEEEccEEEEEccccHHHHHHHHHHHccccccccccccccccccccEEEEEccccccccccccEEEEEEccccccccccHHccccccccccccccccccccccHHHHHHHHccccHHHHHHccccccccccEEEEEccccccHHHHccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccEEccccccccEEccccEEEccccEEEEccHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccc //