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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57334.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  67/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.6.1
:269 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   13->93 3d70A PDBj 1e-12 22.7 %
:RPS:PDB   134->242 2dg6A PDBj 9e-06 16.8 %
:RPS:SCOP  13->83 1j9iA  a.6.1.5 * 5e-11 12.3 %
:RPS:SCOP  58->93 1q08A  a.6.1.3 * 1e-04 28.6 %
:HMM:SCOP  12->94 1jbgA_ a.6.1.3 * 1.8e-12 40.3 %
:RPS:PFM   29->55 PF00376 * MerR 5e-04 55.6 %
:HMM:PFM   25->55 PF00376 * MerR 2.5e-15 48.4 31/38  
:BLT:SWISS 9->211 Y1859_MYCBO 7e-45 54.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57334.1 GT:GENE BAD57334.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2647819..2648628 GB:FROM 2647819 GB:TO 2648628 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57334.1 LENGTH 269 SQ:AASEQ MTGAAQQWARGGMSIGSVLDLLRPDFPDVTISKIRFLESEGLIRPERTPSGYRRFSVADCERLRFILTAQRDQYLPLKVIKEQLEAIDKGAATLGVREARARALSSRAGGAEAPAAGAGSAGGRGAPRKLGVVPDEVSPEELRVDHEIRLTRADLLAQAGIDEPFLNDLIRAGLITPGPAGFFDGEAVTLAKTARAMAEFGLEARHLRAFKLAADREAALLAQIAAPIAKSRDAGARARAEETVRELAALSLTLHTSLVKASVRHALGN GT:EXON 1|1-269:0| BL:SWS:NREP 1 BL:SWS:REP 9->211|Y1859_MYCBO|7e-45|54.4|182/247| SEG 97->128|reararalssraggaeapaagagsaggrgapr| SEG 212->229|laadreaallaqiaapia| SEG 247->258|laalsltlhtsl| RP:PDB:NREP 2 RP:PDB:REP 13->93|3d70A|1e-12|22.7|75/276| RP:PDB:REP 134->242|2dg6A|9e-06|16.8|107/201| RP:PFM:NREP 1 RP:PFM:REP 29->55|PF00376|5e-04|55.6|27/37|MerR| HM:PFM:NREP 1 HM:PFM:REP 25->55|PF00376|2.5e-15|48.4|31/38|MerR| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00376|IPR000551| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00376|IPR000551| RP:SCP:NREP 2 RP:SCP:REP 13->83|1j9iA|5e-11|12.3|65/68|a.6.1.5| RP:SCP:REP 58->93|1q08A|1e-04|28.6|35/94|a.6.1.3| HM:SCP:REP 12->94|1jbgA_|1.8e-12|40.3|77/106|a.6.1.3|1/1|Putative DNA-binding domain| OP:NHOMO 67 OP:NHOMOORG 67 OP:PATTERN -------------------------------------------------------------------- ---1111111111111111-1111111111111111111111111111111111111111111111-111--------1---1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 182 STR:RPRED 67.7 SQ:SECSTR ############EEHHHHHHHH#####TccHHHHHHHHHTTccccEcTTTccEEEcGGGGGHHHHHHHH#HHHTccHHHHHHHTTccHHHHHH########################################ccTTcHHHHHHHHHHHHHTcHHHHHHTTTcHHHHHHHHHHHHHTTccccHH##HHHHHHHHHHHHHHHHHHHTTTccHHHHHHHHTHHHHHHHHHHHHHHHHHHHTccc########################### DISOP:02AL 1-12, 90-123, 230-240| PSIPRED ccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHccccccccccccEEccHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccccccccccHHHcccHHHHcccHHHcccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc //