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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57343.1
DDBJ      :             putative endonuclease
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  260/915 : Eukaryota  15/199 : Viruses  0/175   --->[See Alignment]
d.4.1
:177 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   104->149 2qgpC PDBj 4e-05 41.3 %
:RPS:PDB   101->141 1bxiB PDBj 5e-10 17.1 %
:RPS:SCOP  96->173 1e7dA2  d.4.1.5 * 8e-07 12.8 %
:RPS:PFM   103->142 PF01844 * HNH 3e-06 55.0 %
:HMM:PFM   103->145 PF01844 * HNH 4.7e-14 41.9 43/52  
:HMM:PFM   9->44 PF05991 * DUF901 0.00068 38.9 36/166  
:BLT:SWISS 45->89 QUEA_CAMC1 9e-04 33.3 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57343.1 GT:GENE BAD57343.1 GT:PRODUCT putative endonuclease GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2658205..2658738) GB:FROM 2658205 GB:TO 2658738 GB:DIRECTION - GB:PRODUCT putative endonuclease GB:PROTEIN_ID BAD57343.1 LENGTH 177 SQ:AASEQ MLPAAVPEVTADNWIHTRVLVLNASYEALTEVTADRAVVLLISGIAESIADREPYLPIRSQRLEIALPQTIRLRHYVFLEHAAVVHDDSRATLAGVLRRDGNRCGYCADWAHTVDHIRPRSRGGPNTWDNLVACCAPCNTRKADRTPEEAGMRLLWQPKAPDHFGKRQRHIWKQLSA GT:EXON 1|1-177:0| BL:SWS:NREP 1 BL:SWS:REP 45->89|QUEA_CAMC1|9e-04|33.3|45/100| BL:PDB:NREP 1 BL:PDB:REP 104->149|2qgpC|4e-05|41.3|46/88| RP:PDB:NREP 1 RP:PDB:REP 101->141|1bxiB|5e-10|17.1|41/129| RP:PFM:NREP 1 RP:PFM:REP 103->142|PF01844|3e-06|55.0|40/49|HNH| HM:PFM:NREP 2 HM:PFM:REP 103->145|PF01844|4.7e-14|41.9|43/52|HNH| HM:PFM:REP 9->44|PF05991|0.00068|38.9|36/166|DUF901| GO:PFM:NREP 2 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF01844|IPR002711| GO:PFM GO:0004519|"GO:endonuclease activity"|PF01844|IPR002711| RP:SCP:NREP 1 RP:SCP:REP 96->173|1e7dA2|8e-07|12.8|78/103|d.4.1.5| OP:NHOMO 306 OP:NHOMOORG 275 OP:PATTERN -------------------------------------------------------------------- 11111---------11111-1111111111111111222211111-1--111121-11--11--1112221-----------1------------------------11----------------11-11111-11111111111131221112211111111111123221111111111111111111---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2-11111-----111211111111111111111111-11111111111-111111111111111111-111111111111111111111111-----------------------------11111----------------------------------11----2111111121-------------------11------1------------------111122---------------------------21---1-1--1------------------------1111------------------------------------------------------------------------------------------------------112----------------------------------------------------------------------11111111111111------1111----------------------------------------------11- ------------------------------------------------------------------------------------------------------------3------------------------------------------------------------------111--1111-21-2-111-----1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 54 STR:RPRED 30.5 SQ:SECSTR ###############################################################################################HHTTccGGGccTTccccEEEEcccTTTTcccccGGEEEEcHHHHHHHHHccTTT############################ DISOP:02AL 1-2, 5-7, 172-177| PSIPRED ccccccccccccccccccEEEEcccccEEEEEcHHHHHHHHHHccEEEEEEcccEEEEEEEEccEEcccEEEEEEEEccccccccccccHHHHHHHHHHHccEEEEccccccEEEEEcEEEccccccHHHHHHHHHHHHHHcccccHHHHHHcccccccccccHHHcccEEEEEEcc //