[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57348.1
DDBJ      :             putative dehydrogenase
Swiss-Prot:             

Homologs  Archaea  20/68 : Bacteria  450/915 : Eukaryota  124/199 : Viruses  0/175   --->[See Alignment]
b.35.1c.2.1c.30.1
:350 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   1->199 1y9aA PDBj 6e-19 36.6 %
:RPS:PDB   1->347 2b83A PDBj 2e-30 22.2 %
:RPS:SCOP  1->179 1bxzA1  b.35.1.2 * 5e-23 27.0 %
:RPS:SCOP  167->199 1a9xA3  c.30.1.1 * 2e-06 15.2 %
:HMM:SCOP  1->196 1kolA1 b.35.1.2 * 4.8e-47 39.8 %
:HMM:SCOP  144->313 1d1tA2 c.2.1.1 * 1.2e-41 40.6 %
:RPS:PFM   29->107 PF08240 * ADH_N 3e-11 41.8 %
:HMM:PFM   26->133 PF08240 * ADH_N 1.6e-25 40.4 99/109  
:HMM:PFM   182->300 PF00107 * ADH_zinc_N 2.7e-22 39.8 118/130  
:BLT:SWISS 1->199,285->348 YBDR_ECOLI 1e-28 35.2 %
:PROS 59->73|PS00059|ADH_ZINC
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57348.1 GT:GENE BAD57348.1 GT:PRODUCT putative dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2662952..2664004) GB:FROM 2662952 GB:TO 2664004 GB:DIRECTION - GB:PRODUCT putative dehydrogenase GB:PROTEIN_ID BAD57348.1 LENGTH 350 SQ:AASEQ MKALTYAGPQAISCTEVDDPALPGPDGAIVRVTAAGICGSDLHIYGGHGFTPGTGYGVGHEAVGQVVELGPQAHGLSVGDRVLVPASAGCDRCGNCRAGVVAACARQPLPVDACYGLGGALAGAQAQLLAVPHAGGNLVRLPDAIGDEAAVVLTDNAPTAWYGARRARIAPGDTVVVIGLGPVGLMAVQAAFVMGAARVLGVDLVADRRARAAALGAEPVEDDDPKQAVREMLGGGGADVAVEAVGADATIALATAVVGHRGRVAVVGVSQNRAFPFHLPLAQVKELEFHIGLCSVQYELPALLSLTAAGRLRPEVVVSHRLPMSAGARAYRMFADRADDVCKVVLDPWR GT:EXON 1|1-350:0| BL:SWS:NREP 1 BL:SWS:REP 1->199,285->348|YBDR_ECOLI|1e-28|35.2|263/412| PROS 59->73|PS00059|ADH_ZINC|PDOC00058| SEG 45->60|ygghgftpgtgygvgh| SEG 116->130|glggalagaqaqlla| SEG 201->217|gvdlvadrraraaalga| SEG 234->249|ggggadvaveavgada| SEG 256->269|avvghrgrvavvgv| BL:PDB:NREP 1 BL:PDB:REP 1->199|1y9aA|6e-19|36.6|191/359| RP:PDB:NREP 1 RP:PDB:REP 1->347|2b83A|2e-30|22.2|342/351| RP:PFM:NREP 1 RP:PFM:REP 29->107|PF08240|3e-11|41.8|79/108|ADH_N| HM:PFM:NREP 2 HM:PFM:REP 26->133|PF08240|1.6e-25|40.4|99/109|ADH_N| HM:PFM:REP 182->300|PF00107|2.7e-22|39.8|118/130|ADH_zinc_N| GO:PFM:NREP 1 GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF08240|IPR013154| RP:SCP:NREP 2 RP:SCP:REP 1->179|1bxzA1|5e-23|27.0|174/178|b.35.1.2| RP:SCP:REP 167->199|1a9xA3|2e-06|15.2|33/127|c.30.1.1| HM:SCP:REP 1->196|1kolA1|4.8e-47|39.8|191/0|b.35.1.2|1/1|GroES-like| HM:SCP:REP 144->313|1d1tA2|1.2e-41|40.6|170/0|c.2.1.1|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 1339 OP:NHOMOORG 594 OP:PATTERN 11------------1--2-1----61111241-1----------11----211-------------1- -2513--1--2----3333-36114822222274543683-3147231-2--53622-11-2242266433-1111211---5-----1111-1-----1-1---51321--------------------------111---------17---------------11447-------------222111--5-522222222-222222622234221211-21-11111111111111111211112-1122--1--1-2--12211--1-1---111212-111111111111111111111111111111111---1112----2-------2--11----------------111--1---2111---1212-112-----21-222--11-11----------2-63236343232-62215533545433-1-1131222-11--------1441--1--------------------------------52---11115332246222155374444-21562122--115-31-1-11--11---2--1-111--1---12---1-------------222---11-1241341-1------------------------------2-1111-----------------------11---------311---2221211122-223312221221122222-12--111-122-2121112111-1-1-122211-----------------111111------44---1-----------11222--11-5-42441422323233333------------------------1-32222111-------211---------------------1-----------1-------1------1--1- --------------3666348C886973333342224533343311852478BG68546222-14-2--2--12----------1131-69664324242-12111-12131-11-1-------21---141-1-1----1-111-1-1-1----1-11----11-221-421--122-----2231226131-2225- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 348 STR:RPRED 99.4 SQ:SECSTR cEEEEEEETTEEEEEEcccccEccTTcEEEEEEEEcccHHHHHHHHTcTTcccccEEccccEEEEEEEEcTTcccccTTcEEEEcccccccccHHHHTTcGGGTTcTTTTccTTcccTTTccccccccEEEccHHHHcEEccTTccHHHHHTTTTHHHHHHHHHHHTTccTTccEEEEcccHHHHHHHHHHHTTTcccEEEEcccHHHHHHHHHHTccEEGccHHHHHHHHTTTccEEEEEEccccTTHHHHHHHHEEEEEEEEEcccccTTccccccTTTTGGGTcccEEEEcccccHHHHHHHHHHTTcccGGGGEEEEEcGGGHHHHHHHHHHccTTccEEEEET## PSIPRED cEEEEEEccccEEEEEEcccccccccEEEEEEEEEEEcccEEEEEEcccccccccEEcccccEEEEEEEcccccccccccEEEEcccccccccHHHHcccccccccccccccccccccccccccEEEEEEEcccccEEEEccccccHHHHHHHcccHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHcccEEEcccHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHccccEEEEEcccccccccccHHHEEEEEEEEEEEEcccHHHHHHHHHHHHccccccHHHEEEEEcHHHHHHHHHHHHcccccEEEEEEEccc //