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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57349.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  26/68 : Bacteria  517/915 : Eukaryota  106/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:248 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   40->246 3gafF PDBj 5e-18 31.7 %
:RPS:PDB   4->248 1dohB PDBj 3e-28 22.1 %
:RPS:SCOP  4->247 1bdbA  c.2.1.2 * 4e-28 19.8 %
:HMM:SCOP  3->246 1zemA1 c.2.1.2 * 1.1e-76 40.3 %
:RPS:PFM   8->125 PF00106 * adh_short 4e-12 38.8 %
:HMM:PFM   8->174 PF00106 * adh_short 6.7e-37 29.8 161/167  
:BLT:SWISS 5->246 FABG_CHLTR 2e-20 29.0 %
:PROS 145->173|PS00061|ADH_SHORT
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57349.1 GT:GENE BAD57349.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2664039..2664785) GB:FROM 2664039 GB:TO 2664785 GB:DIRECTION - GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD57349.1 LENGTH 248 SQ:AASEQ MLVSLTDKVVLVTGGSRGLGKQMVLAFAAAGADVVIASRKFDGCAALAEQVREQHGRRALPVAANVSDWAQCDALAEAAYAEFGRVDVLVNNAGLSPLYPSLDQVSEALFDKVIGVNLKGPFRLSALIGARMAAGAGGSIINISSIEAARPEPLAVPYAAAKAGLNALTAGLAQTFGPTVRVNTIQCGPFATDISAAWPDELRAELARHTALGRVGEPHEIIGAALFFATEASSFASGATLALDGGWR GT:EXON 1|1-248:0| BL:SWS:NREP 1 BL:SWS:REP 5->246|FABG_CHLTR|2e-20|29.0|241/248| PROS 145->173|PS00061|ADH_SHORT|PDOC00060| SEG 24->37|vlafaaagadvvia| SEG 133->149|aagaggsiinissieaa| SEG 159->173|aaakaglnaltagla| BL:PDB:NREP 1 BL:PDB:REP 40->246|3gafF|5e-18|31.7|202/246| RP:PDB:NREP 1 RP:PDB:REP 4->248|1dohB|3e-28|22.1|244/271| RP:PFM:NREP 1 RP:PFM:REP 8->125|PF00106|4e-12|38.8|116/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 8->174|PF00106|6.7e-37|29.8|161/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 4->247|1bdbA|4e-28|19.8|243/267|c.2.1.2| HM:SCP:REP 3->246|1zemA1|1.1e-76|40.3|243/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 1598 OP:NHOMOORG 649 OP:PATTERN -------111111111-2-1----21121-12-1--------------------11----1--13-12 415-3--1------48A11-14116B11111677876789131E313-232-112-2---243-3262421--------1-11----------------113222714121111111-----------------1-1--1122223--13--222-----11--2-3324----1-----1--211--12-7131111111311112-12-2222111312352121122-181-----------------112-2----1---22111-1--111------1111---111111111111111111111111----------1-3-42222122-21422221331211-422--1-11--131222211112125226-----42AA9-114645655555555557-11512915267-7445783BD996232215223-23313--------2234--21-----111---------------------1228211221-6787863555544AE65554584D5984225552-221227364-1-11111--------112231-423---------1-11111122112-114----------------------1111-22-1132--113--2111-221111211-1-1------1------1212221---1---------------1----------4331----1-211121121111112---111---111111111111-----2---1111-423------------------131---221122124323346764345-------------1--------112143422111------11222233----------2---------------------------1---21--22- ------------121311-15523734121323----1-1-11211-134423422223221-13----2---11---------11---3-112-11-----121--21-123442-1----1-2--2-362-142---111132-11--2--1---13B71-1111--1----2--1-E----2---11411-----1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 248 STR:RPRED 100.0 SQ:SECSTR cccccTTcEEEETTTTcHHHHHHHHHHHHTTcEEEEEEcccHHHHHHHHHHHHHTTccEEEEEccTTcHHHHHHHHHHHHHHHccccEEEEccccccccccGGGccHHHHHHHHHHHTHHHHHHHHHHHHHccTTcEEEEEccGGGTcccccccHHHHHHHHHHHHHHHHHHHHHGGGTcEEEEEEEcccccHHHHHHGGGGcTTHHHccTTcccccHHHHHHHHHHHHcGGGTTccccEEEEccccc DISOP:02AL 1-3| PSIPRED ccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHcccEEEEEEEccccHHHHHHHHHHHHHHHccccEEEEccccccccccHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccEEEccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHcccHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccEEEEEccccc //