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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57363.1
DDBJ      :             putative RNA helicase
Swiss-Prot:             

Homologs  Archaea  43/68 : Bacteria  825/915 : Eukaryota  198/199 : Viruses  0/175   --->[See Alignment]
c.37.1
:518 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   21->392 2db3A PDBj 1e-47 31.5 %
:RPS:PDB   31->377 3bxzB PDBj 1e-53 12.9 %
:RPS:SCOP  28->232 1fuuA  c.37.1.19 * 3e-41 29.4 %
:RPS:SCOP  248->384 1gm5A4  c.37.1.19 * 2e-18 20.4 %
:HMM:SCOP  100->387 1wp9A2 c.37.1.19 * 5.1e-67 40.4 %
:RPS:PFM   55->216 PF00270 * DEAD 8e-29 46.2 %
:RPS:PFM   305->363 PF00271 * Helicase_C 3e-08 44.1 %
:HMM:PFM   54->223 PF00270 * DEAD 4.6e-46 43.1 167/167  
:HMM:PFM   288->364 PF00271 * Helicase_C 1.3e-24 41.6 77/78  
:BLT:SWISS 32->387 EXP9_STRR6 4e-58 36.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57363.1 GT:GENE BAD57363.1 GT:PRODUCT putative RNA helicase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2680563..2682119) GB:FROM 2680563 GB:TO 2682119 GB:DIRECTION - GB:PRODUCT putative RNA helicase GB:PROTEIN_ID BAD57363.1 LENGTH 518 SQ:AASEQ MALPRGAPVRRATKGSISVTTSPDAATPTVTFAELGLPAVLVQALRRNGIDAPFPIQAATVPDALAGKDVLGRGPTGSGKTLAFGLPMLVRLAGNAAAPRRPRGLVLVPTRELAAQIERALDEPALALGLRVASVVGGAPIKRQADRLARGVDLLIATPGRLSDLIAQGAAALDDVSITALDEADHMADMGFLPQVTRLLDRTPADGQRLLFSATLDGEVDKLVKRYLRNPVTHSTAPPSASVATMSHHLLYVRKADKRAVIAEIAAREGLTILFVRTKHGADRLAKQLRAAGIAAGALHGGKAQNNRTRTLAAFADGSVPVLVTTDVAARGIHVDGISLVVHADPPAEPKAYLHRAGRTARAGEDGVVVTLVTEDERADVEKMTRKAGVDVVGVNVTPGHPALREITGARTPSGVPVPAPTPPGGPQQAPQSRGAVTTHRAGSARRGRGGARTTEAVGSHADRPARGRAAAETGGARTGSRRAEGNAEARGTRGGHPGRPARHTGAPTGNRRRRAQG GT:EXON 1|1-518:0| BL:SWS:NREP 1 BL:SWS:REP 32->387|EXP9_STRR6|4e-58|36.5|353/524| SEG 91->105|rlagnaaaprrprgl| SEG 285->304|lakqlraagiaagalhggka| SEG 412->433|tpsgvpvpaptppggpqqapqs| SEG 438->457|tthragsarrgrggarttea| SEG 466->486|argraaaetggartgsrraeg| BL:PDB:NREP 1 BL:PDB:REP 21->392|2db3A|1e-47|31.5|372/420| RP:PDB:NREP 1 RP:PDB:REP 31->377|3bxzB|1e-53|12.9|341/440| RP:PFM:NREP 2 RP:PFM:REP 55->216|PF00270|8e-29|46.2|160/167|DEAD| RP:PFM:REP 305->363|PF00271|3e-08|44.1|59/76|Helicase_C| HM:PFM:NREP 2 HM:PFM:REP 54->223|PF00270|4.6e-46|43.1|167/167|DEAD| HM:PFM:REP 288->364|PF00271|1.3e-24|41.6|77/78|Helicase_C| GO:PFM:NREP 6 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00270|IPR011545| GO:PFM GO:0005524|"GO:ATP binding"|PF00270|IPR011545| GO:PFM GO:0008026|"GO:ATP-dependent helicase activity"|PF00270|IPR011545| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00271|IPR001650| GO:PFM GO:0004386|"GO:helicase activity"|PF00271|IPR001650| GO:PFM GO:0005524|"GO:ATP binding"|PF00271|IPR001650| RP:SCP:NREP 2 RP:SCP:REP 28->232|1fuuA|3e-41|29.4|201/215|c.37.1.19| RP:SCP:REP 248->384|1gm5A4|2e-18|20.4|137/191|c.37.1.19| HM:SCP:REP 100->387|1wp9A2|5.1e-67|40.4|267/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 9799 OP:NHOMOORG 1066 OP:PATTERN ---1--1111111121-2-----2-------11111111111111121-2112----2121112--11 1111333333332332322-23113322222233333555-32333432544333323--4432333565211111111131-11111444413221--5155426A716--------------222122223212111111111121-1111----23132111-2332111111111111131111--1124555555554555555534444555222325444444454222222222222222222223333333333333333343333222233333333333333333323333333333333333333333333-523655555555553422433334-1-132113334-1111------113-3423422212333333223333333333333333-3333333324224333333333333323334244444334444444436663323------------111111111111111111333324444355555554444445544443455544452344454544565554554343353222222222244573725253214333-444534544333364424--1-------1111111115111522997646B6899ACCCCCCCCCCCBCCBCBB1-2222311111154555555555555555-55555555555555555555555544555555555555454455554555541544556644556114511111333325448323333233333333222222222256666666666666666673222222225AAAA999998BBAA44555555553333232-332222--------11312132---1--11---11-11-11111111------33 LLKMTQP4*ONJQPTNONMOOOOPQOOOOPOOONNLNQMOLOOONNNOLMNOOOMMMMNOOONNNNNNGOONMMNOQKOPOOMNNMLN-MXPONORRMONPNPZbbAR*QwjudlesSRRLTcTrnP*P**l3qh*MTUPjQWgSNZWPQcOGuRgUTXX*vdZSUTiYe*eidRIYYg*ecXSauj**O*pWUcWXYa ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 406 STR:RPRED 78.4 SQ:SECSTR ##HHccccccccGGGccHcccccccccccccGGGcHHHHHHHHHHHHHHHTcccccHHHHHHHHHTTTTEEEEccTTccHHHHTHHHHHHHccTTHHTTccccEEEEEccHHHHHHHHHTTHHHHHHTTccEEEccTTccHHHHHHHHHccEEEEEHHHHHHHHHHHHTcccGGGcccccHHHTTcccccEEccEEccTTTGGGcccEEEEEEccccTTccHHHHHcccEEEEcccccccccEEcccEEEccHHHHHHHHHHHHHHHHTccEEEEcccHHHHHHHHHHHHHTcccccEEccccHHHHHHHHTTTTccccEEEEcTTccTTccccTTccTHEEEccccccTTHHHHHHHTccGGGcccEEEEEEEHHHHHHHHHHHHHTTcTHHccccccEEccHHHHH############################################################################################################## DISOP:02AL 1-22, 403-518| PSIPRED cccccHHHHHHHccccccEEcccccccccccHHHccccHHHHHHHHHcccccccHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHcccccccccEEEEEEccHHHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHcccEEEEEccHHHHHHHHcccEEEcccEEEEEEccHHHcccccHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHHccEEEEEccccccccccEEEEEEEccHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHcccccEEEEccHHHcccccccccEEEEccccccHHHcccccccEEccccccEEEEEEcHHHHHHHHHHHHHHccccccEEccccccHHHHHHHccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc //