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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57380.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  51/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:228 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   9->181 1bj0A PDBj 6e-12 31.7 %
:RPS:PDB   5->123 2dt5A PDBj 1e-14 9.2 %
:RPS:SCOP  5->69 2iu5A1  a.4.1.9 * 3e-13 13.8 %
:RPS:SCOP  81->181 1a6iA2  a.121.1.1 * 2e-10 20.2 %
:HMM:SCOP  7->69 2g7lA1 a.4.1.9 * 1.9e-14 36.5 %
:HMM:SCOP  79->227 2g7gA2 a.121.1.1 * 4.6e-18 28.0 %
:RPS:PFM   15->61 PF00440 * TetR_N 1e-05 42.6 %
:HMM:PFM   15->61 PF00440 * TetR_N 5.3e-17 44.7 47/47  
:HMM:PFM   79->222 PF02909 * TetR_C 2.2e-08 22.0 127/139  
:BLT:SWISS 9->86 TETR8_PASPI 4e-11 34.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57380.1 GT:GENE BAD57380.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2695494..2696180) GB:FROM 2695494 GB:TO 2696180 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57380.1 LENGTH 228 SQ:AASEQ MSDGMTEPKLSREAIVDAAIALADEDGLDALSMRRIADRMGVGAMSLYRHVAGKDELIAAMTDEVAGRYPYPSAAGRGWTWRDRVRIAAEVDWQLYQQHPWVLLTFAMPRYSFGPQSLSCLGWLVEGFRELGVSTREAMRMTFTVWNYISGATLPHISEALLLRQDAGAEAGNGLRALLQGEPIGEPPAALADLLGAGMDDLTQEQLLYAGLEALCDGFAARVAARTG GT:EXON 1|1-228:0| BL:SWS:NREP 1 BL:SWS:REP 9->86|TETR8_PASPI|4e-11|34.6|78/218| SEG 189->202|aaladllgagmddl| BL:PDB:NREP 1 BL:PDB:REP 9->181|1bj0A|6e-12|31.7|161/193| RP:PDB:NREP 1 RP:PDB:REP 5->123|2dt5A|1e-14|9.2|119/210| RP:PFM:NREP 1 RP:PFM:REP 15->61|PF00440|1e-05|42.6|47/47|TetR_N| HM:PFM:NREP 2 HM:PFM:REP 15->61|PF00440|5.3e-17|44.7|47/47|TetR_N| HM:PFM:REP 79->222|PF02909|2.2e-08|22.0|127/139|TetR_C| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| RP:SCP:NREP 2 RP:SCP:REP 5->69|2iu5A1|3e-13|13.8|65/71|a.4.1.9| RP:SCP:REP 81->181|1a6iA2|2e-10|20.2|99/127|a.121.1.1| HM:SCP:REP 7->69|2g7lA1|1.9e-14|36.5|63/0|a.4.1.9|1/1|Homeodomain-like| HM:SCP:REP 79->227|2g7gA2|4.6e-18|28.0|132/0|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain| OP:NHOMO 122 OP:NHOMOORG 51 OP:PATTERN -------------------------------------------------------------------- ----8-------1-31-----1---1-----12-1-7633-537281----------2--331-328355------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------1-----------------------------------------------------------------------------------------------------------------------------1---------------------------------------1-----111111111---------------------------------------------------------------1-----------------------------------------------------------------------------------------------------12-------------------------------------------------------------------------------------------------------------1------1-------------------------------------------------------------------------------------------------1-1------------------------------------------11----------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 179 STR:RPRED 78.5 SQ:SECSTR ####ccHHHHHHHHHHHHHHHHHHHTTccEEcHHHHHHHHTccHHHHHHHHHHTTccccTTTcEEHHHHHHHHHHHHTTTccEEEEEEcccHHHHHHHHcccccccEEEEEEEEccTTTTTcEHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHHHHTcccccHHHHHHHHHHHHTccTTcT############################################# DISOP:02AL 1-13, 227-228| PSIPRED cccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccEEEcccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccc //