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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57401.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  40/915 : Eukaryota  33/199 : Viruses  1/175   --->[See Alignment]
c.2.1c.72.3
:481 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   148->232 1gegE PDBj 8e-04 35.4 %
:RPS:PDB   129->233 3bywC PDBj 5e-09 8.7 %
:RPS:PDB   369->430 3dwfA PDBj 4e-04 24.1 %
:RPS:SCOP  142->244 1u7uA  c.72.3.1 * 7e-09 13.7 %
:RPS:SCOP  377->441 1yo6A1  c.2.1.2 * 1e-05 25.0 %
:HMM:SCOP  141->458 1spxA_ c.2.1.2 * 4.3e-28 27.0 %
:RPS:PFM   146->232 PF00106 * adh_short 3e-04 34.1 %
:HMM:PFM   148->234 PF00106 * adh_short 1e-11 30.6 85/167  
:BLT:SWISS 106->459 YR665_MIMIV 3e-27 35.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57401.1 GT:GENE BAD57401.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2722511..2723956) GB:FROM 2722511 GB:TO 2723956 GB:DIRECTION - GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD57401.1 LENGTH 481 SQ:AASEQ MFPDPMAETRIDPDELATCLRVLDQAAELDKDDPDSVAVQRAVGHMFKKLKQRRRSEARRRVAEADRAVVAATATGSPNRIDDETAGIPLSSSAAGASAGELLRARPCYICKQRYTRVDAFYHQLCPECAAAGHAKRDARTDLTGRRALLTGGRAKIGMYIALRLLRDGAHTTITTRFPNDAVRRFAAMEDSAQWLHRLRVVGIDLRDPAQVVALADDVAAQGPLDILINNAAQTVRRSPGAYSALVEAESAPLPAGALPDVVTYGKTMQPHPTALTASLAPSLTAADVAELALVAGSATPDRISRGVAIDAGGLVPDLAHTNSWVQTVGEVDPTELLEVQLCNSVAPFILVSRLRPAMAAAPARRKYIVNVSAMEGQFSRGYKGPGHPHTNMAKAALNMLTRTSAGEMFESDGILMTAVDTGWITDERPHYTKMRLAEEGFHAPLDLVDGAARVYDPIVQGENGVDLYGCFLKDYRPSPW GT:EXON 1|1-481:0| BL:SWS:NREP 1 BL:SWS:REP 106->459|YR665_MIMIV|3e-27|35.2|318/467| SEG 53->75|rrrsearrrvaeadravvaatat| SEG 91->100|sssaagasag| SEG 210->222|aqvvaladdvaaq| SEG 273->287|ptaltaslapsltaa| SEG 354->366|rlrpamaaaparr| BL:PDB:NREP 1 BL:PDB:REP 148->232|1gegE|8e-04|35.4|82/256| RP:PDB:NREP 2 RP:PDB:REP 129->233|3bywC|5e-09|8.7|103/158| RP:PDB:REP 369->430|3dwfA|4e-04|24.1|58/271| RP:PFM:NREP 1 RP:PFM:REP 146->232|PF00106|3e-04|34.1|85/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 148->234|PF00106|1e-11|30.6|85/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 2 RP:SCP:REP 142->244|1u7uA|7e-09|13.7|102/198|c.72.3.1| RP:SCP:REP 377->441|1yo6A1|1e-05|25.0|64/237|c.2.1.2| HM:SCP:REP 141->458|1spxA_|4.3e-28|27.0|226/264|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 110 OP:NHOMOORG 74 OP:PATTERN -------------------------------------------------------------------- --1-2----------------1----------1---1111-------1-11-111--1------2--111---------------------------------------------------------------------------------------------------1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------111111---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11111111--------11--11------------------------------------------------- ----322-211-221--------1-1-----------------11111---------------------------------------------1-1------------77-----------------------------------------------------1--------------1A111---------1121223 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- STR:NPRED 240 STR:RPRED 49.9 SQ:SECSTR ##############################################################################ETTEEEEEEEEEEEEEEccccccEEEEcccTTTcTTccccccGGGEEEccEEEEEEGGGGGcccTTccEEEEcccTTcTTGGGTcEEEEEETTEEEEEETTEEEEEHHEcHHHHTTccTTcEEEEEEccccTcTTccEEEccccccccccccccccccccccHHHHHHHHT#######################################################################################################################EEEEEEGGGTcccHHHHTTcHHHHHHHHHHHHHHHHHHHHHHHTTccEEEEEEEcccccHHHHHHTccT############################################ DISOP:02AL 1-7, 50-73, 77-79, 90-92, 95-98, 134-139| PSIPRED ccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHcHHHHHHcccccccccccccccccEEEEcccHHHHHHccccccccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHEEEEHHHccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHcccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccEEcccccccHHHccccccccHHHHHHHHHHHHcHHHccccccccccEEEcccccccc //