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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57404.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  27/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:208 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   22->190 2qibA PDBj 8e-11 29.1 %
:RPS:PDB   22->196 3br3B PDBj 4e-16 14.3 %
:RPS:SCOP  22->74 1z77A1  a.4.1.9 * 3e-13 43.4 %
:HMM:SCOP  7->93 1t33A1 a.4.1.9 * 7e-17 37.2 %
:HMM:SCOP  87->200 2genA2 a.121.1.1 * 0.00017 21.1 %
:RPS:PFM   23->69 PF00440 * TetR_N 9e-05 38.3 %
:HMM:PFM   23->69 PF00440 * TetR_N 5.8e-18 40.4 47/47  
:BLT:SWISS 27->98 BETI_RHIME 1e-08 37.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57404.1 GT:GENE BAD57404.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2726000..2726626 GB:FROM 2726000 GB:TO 2726626 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57404.1 LENGTH 208 SQ:AASEQ MPGHSEAPARRRRLEPDERRAQILARAIEMFGERPYAAVSTAELAQRSGVARGLINHYFGNKRDLYLAVVRRMVTLPRADDMIEPTGTPRERVDASVRWLLDTIAEHGSTWVKVTSHEGVGDDPEVQQILDEADDAAAERTLRMVGLADSAHSAELRAMVRSYGGLVKAAGREWITRGNLTRDQVHHLLADLLYTLVTETMRTVDTAE GT:EXON 1|1-208:0| BL:SWS:NREP 1 BL:SWS:REP 27->98|BETI_RHIME|1e-08|37.5|72/203| SEG 6->21|eaparrrrlepderra| BL:PDB:NREP 1 BL:PDB:REP 22->190|2qibA|8e-11|29.1|165/217| RP:PDB:NREP 1 RP:PDB:REP 22->196|3br3B|4e-16|14.3|175/183| RP:PFM:NREP 1 RP:PFM:REP 23->69|PF00440|9e-05|38.3|47/47|TetR_N| HM:PFM:NREP 1 HM:PFM:REP 23->69|PF00440|5.8e-18|40.4|47/47|TetR_N| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| RP:SCP:NREP 1 RP:SCP:REP 22->74|1z77A1|3e-13|43.4|53/75|a.4.1.9| HM:SCP:REP 7->93|1t33A1|7e-17|37.2|86/0|a.4.1.9|1/1|Homeodomain-like| HM:SCP:REP 87->200|2genA2|0.00017|21.1|114/0|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain| OP:NHOMO 32 OP:NHOMOORG 27 OP:PATTERN -------------------------------------------------------------------- ----1----------------1----------1---1223-----------------1----1-11211-1---------------------------------------------------------------------------------------------------------------------------1111111---1-111------1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 187 STR:RPRED 89.9 SQ:SECSTR #####################HHHHHHHHHHHHHHHHHccHHHHHHHTTccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHGGGcccHHHHHHHHHHHHHHccccGGGHHHHHHHHHHTTccHHHHHHHHHHHHHHHHHHHHHHHHHHHTccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcHHHTTTTccH DISOP:02AL 1-21, 204-208| PSIPRED cccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccc //